view scripts/inspect.R @ 0:2fed32b5aa02 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/music/ commit 08c6fd3885bdfbf8b5c3f4dcc2d04729b577e3e1"

suppressWarnings(suppressPackageStartupMessages(library(xbioc)))
suppressWarnings(suppressPackageStartupMessages(library(MuSiC)))

args <- commandArgs(trailingOnly = TRUE)
source(args[1])

printout <- function(text) {
    if (typeof(text) %in% c("list", "vector")) {
        write.table(text, file = outfile_tab, quote = F, sep = "\t",
                    col.names = NA)
    } else {
        ## text
        capture.output(text, file = outfile_tab)  # nolint
    }
}

if (inspector %in% c("print", "pData", "fData", "dims", "experimentData",
                     "exprs", "signature", "annotation", "abstract")) {
    op <- get(inspector)
    tab <- op(rds_eset)
    printout(tab)
} else {
    stop(paste0("No such option:", inspector))
}