Mercurial > repos > bgruening > nanopolish_eventalign

diff test-data/variants.vcf @ 0:bee42f615f28 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/nanopolish commit 0e94011a4ea84bf4ae5c2079680a37540e022625
author bgruening
date Wed, 30 May 2018 11:55:18 -0400
parents
children 0938217b3221
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/variants.vcf	Wed May 30 11:55:18 2018 -0400
@@ -0,0 +1,44 @@
+##fileformat=VCFv4.2
+##INFO=<ID=TotalReads,Number=1,Type=Integer,Description="The number of event-space reads used to call the variant">
+##INFO=<ID=SupportFraction,Number=1,Type=Float,Description="The fraction of event-space reads that support the variant">
+##INFO=<ID=BaseCalledReadsWithVariant,Number=1,Type=Integer,Description="The number of base-space reads that support the variant">
+##INFO=<ID=BaseCalledFraction,Number=1,Type=Float,Description="The fraction of base-space reads that support the variant">
+##INFO=<ID=AlleleCount,Number=1,Type=Integer,Description="The inferred number of copies of the allele">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	sample
+tig00000001	200061	.	T	TA	22.4	PASS	TotalReads=67;AlleleCount=1;SupportFraction=0.583757	GT	1
+tig00000001	200180	.	C	CA	30.6	PASS	TotalReads=66;AlleleCount=1;SupportFraction=0.596279	GT	1
+tig00000001	200484	.	G	GA	25.3	PASS	TotalReads=63;AlleleCount=1;SupportFraction=0.569915	GT	1
+tig00000001	200672	.	T	TA	94.1	PASS	TotalReads=65;AlleleCount=1;SupportFraction=0.720712	GT	1
+tig00000001	200776	.	C	CA	82.3	PASS	TotalReads=67;AlleleCount=1;SupportFraction=0.71125	GT	1
+tig00000001	200796	.	T	TA	75.4	PASS	TotalReads=66;AlleleCount=1;SupportFraction=0.698132	GT	1
+tig00000001	201007	.	A	AG	31.0	PASS	TotalReads=65;AlleleCount=1;SupportFraction=0.604821	GT	1
+tig00000001	201216	.	A	AT	85.8	PASS	TotalReads=67;AlleleCount=1;SupportFraction=0.715932	GT	1
+tig00000001	201273	.	G	GT	25.2	PASS	TotalReads=66;AlleleCount=1;SupportFraction=0.588877	GT	1
+tig00000001	201554	.	G	GC	49.9	PASS	TotalReads=76;AlleleCount=1;SupportFraction=0.632029	GT	1
+tig00000001	201588	.	C	CG	125.4	PASS	TotalReads=75;AlleleCount=1;SupportFraction=0.660079	GT	1
+tig00000001	201712	.	C	CA	21.1	PASS	TotalReads=74;AlleleCount=1;SupportFraction=0.57415	GT	1
+tig00000001	200061	.	T	TA	22.4	PASS	TotalReads=67;AlleleCount=1;SupportFraction=0.583757	GT	1
+tig00000001	200180	.	C	CA	30.6	PASS	TotalReads=66;AlleleCount=1;SupportFraction=0.596279	GT	1
+tig00000001	200484	.	G	GA	25.3	PASS	TotalReads=63;AlleleCount=1;SupportFraction=0.569915	GT	1
+tig00000001	200672	.	T	TA	94.1	PASS	TotalReads=65;AlleleCount=1;SupportFraction=0.431464	GT	1
+tig00000001	200776	.	C	CA	82.3	PASS	TotalReads=67;AlleleCount=1;SupportFraction=0.362655	GT	1
+tig00000001	200796	.	T	TAA	117.1	PASS	TotalReads=66;AlleleCount=1;SupportFraction=0.544883	GT	1
+tig00000001	201007	.	A	AG	31.0	PASS	TotalReads=65;AlleleCount=1;SupportFraction=0.604821	GT	1
+tig00000001	201216	.	A	AT	85.8	PASS	TotalReads=67;AlleleCount=1;SupportFraction=0.457699	GT	1
+tig00000001	201273	.	G	GT	25.2	PASS	TotalReads=66;AlleleCount=1;SupportFraction=0.588877	GT	1
+tig00000001	201554	.	G	GC	49.9	PASS	TotalReads=76;AlleleCount=1;SupportFraction=0.632029	GT	1
+tig00000001	201588	.	C	CG	125.4	PASS	TotalReads=75;AlleleCount=1;SupportFraction=0.387616	GT	1
+tig00000001	201712	.	C	CA	21.1	PASS	TotalReads=74;AlleleCount=1;SupportFraction=0.57415	GT	1
+tig00000001	200061	.	T	TA	22.4	PASS	TotalReads=67;AlleleCount=1;SupportFraction=0.583757	GT	1
+tig00000001	200180	.	C	CA	30.6	PASS	TotalReads=66;AlleleCount=1;SupportFraction=0.596279	GT	1
+tig00000001	200484	.	G	GA	25.3	PASS	TotalReads=63;AlleleCount=1;SupportFraction=0.569915	GT	1
+tig00000001	200672	.	T	TA	94.1	PASS	TotalReads=65;AlleleCount=1;SupportFraction=0.431464	GT	1
+tig00000001	200776	.	C	CA	82.3	PASS	TotalReads=67;AlleleCount=1;SupportFraction=0.362655	GT	1
+tig00000001	200796	.	T	TAA	117.1	PASS	TotalReads=66;AlleleCount=1;SupportFraction=0.268565	GT	1
+tig00000001	201007	.	A	AG	31.0	PASS	TotalReads=65;AlleleCount=1;SupportFraction=0.604821	GT	1
+tig00000001	201216	.	A	AT	85.8	PASS	TotalReads=67;AlleleCount=1;SupportFraction=0.457699	GT	1
+tig00000001	201273	.	G	GT	25.2	PASS	TotalReads=66;AlleleCount=1;SupportFraction=0.588877	GT	1
+tig00000001	201554	.	G	GC	49.9	PASS	TotalReads=76;AlleleCount=1;SupportFraction=0.632029	GT	1
+tig00000001	201588	.	C	CG	125.4	PASS	TotalReads=75;AlleleCount=1;SupportFraction=0.387616	GT	1
+tig00000001	201712	.	C	CA	21.1	PASS	TotalReads=74;AlleleCount=1;SupportFraction=0.57415	GT	1