# HG changeset patch
# User bgruening
# Date 1561282560 14400
# Node ID d219b6d8158a379479c45cd5fab7755288b0e951
# Parent  0938217b322172c292c87de804904f90c3e46bb8
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/nanopolish commit 25c22b467760e4784e199125292927bd2274a189-dirty

diff -r 0938217b3221 -r d219b6d8158a nanopolish_eventalign.xml
--- a/nanopolish_eventalign.xml	Tue Jun 18 12:42:00 2019 -0400
+++ b/nanopolish_eventalign.xml	Sun Jun 23 05:36:00 2019 -0400
@@ -1,4 +1,4 @@
-<tool id="nanopolish_eventalign" name="Nanopolish eventalign" version="0.1.0">
+<tool id="nanopolish_eventalign" name="Nanopolish eventalign" version="0.11.1">
     <description>- Align nanopore events to reference k-mers</description>
     <macros>
         <import>macros.xml</import>
@@ -67,7 +67,7 @@
     <inputs>
       <!-- index inputs -->
         <param type="data" name="input_merged" format="fasta,fastq" label="Basecalled merged reads.fa"/>
-        <param type="data" name="input_reads_raw" format="h5,fast5.tar.gz,fast5.tar.bz2,fast5.tar" label="Flat archive file of raw fast5 files"/>
+        <param type="data" name="input_reads_raw" format="fast5.tar.gz,fast5.tar.bz2,fast5.tar" label="Flat archive file of raw fast5 files"/>
 
         <!-- variants consensus inputs -->
         <param type="data" argument="-b" format="bam" label="Reads aligned to the reference genome" />
@@ -161,8 +161,8 @@
             <param name="input_merged" ftype="fasta" value="reads.fasta" />
             <param name="input_reads_raw" ftype="fast5.tar.gz" value="fast5_files.tar.gz" />
             <param name="b" value="reads.sorted.bam" />
-            <param name="reference_source_selector" value="cached" />
-            <param name="ref_file" value="draft"/>
+            <param name="reference_source_selector" value="history" />
+            <param name="ref_file" value="draft.fa"/>
             <param name="w" value="tig00000001:200000-200010" />
             <param name="sam" value="false" />
             <param name="summary" value="false" />