Mercurial > repos > bgruening > nanopolish_methylation

diff test-data/variants.vcf @ 3:02e3c674d917 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/nanopolish commit 89078a214cefd31d28da75ddebb21f546fba79df-dirty
author bgruening
date Wed, 19 Jun 2019 03:45:24 -0400
parents f9dadc362197
children 12efe2f03697
line wrap: on
line diff
--- a/test-data/variants.vcf	Tue Jun 05 18:25:34 2018 -0400
+++ b/test-data/variants.vcf	Wed Jun 19 03:45:24 2019 -0400
@@ -1,4 +1,5 @@
 ##fileformat=VCFv4.2
+##nanopolish_window=tig00000001:200000-202000
 ##INFO=<ID=TotalReads,Number=1,Type=Integer,Description="The number of event-space reads used to call the variant">
 ##INFO=<ID=SupportFraction,Number=1,Type=Float,Description="The fraction of event-space reads that support the variant">
 ##INFO=<ID=BaseCalledReadsWithVariant,Number=1,Type=Integer,Description="The number of base-space reads that support the variant">
@@ -9,30 +10,6 @@
 tig00000001	200061	.	T	TA	22.4	PASS	TotalReads=67;AlleleCount=1;SupportFraction=0.583757	GT	1
 tig00000001	200180	.	C	CA	30.6	PASS	TotalReads=66;AlleleCount=1;SupportFraction=0.596279	GT	1
 tig00000001	200484	.	G	GA	25.3	PASS	TotalReads=63;AlleleCount=1;SupportFraction=0.569915	GT	1
-tig00000001	200672	.	T	TA	94.1	PASS	TotalReads=65;AlleleCount=1;SupportFraction=0.720712	GT	1
-tig00000001	200776	.	C	CA	82.3	PASS	TotalReads=67;AlleleCount=1;SupportFraction=0.71125	GT	1
-tig00000001	200796	.	T	TA	75.4	PASS	TotalReads=66;AlleleCount=1;SupportFraction=0.698132	GT	1
-tig00000001	201007	.	A	AG	31.0	PASS	TotalReads=65;AlleleCount=1;SupportFraction=0.604821	GT	1
-tig00000001	201216	.	A	AT	85.8	PASS	TotalReads=67;AlleleCount=1;SupportFraction=0.715932	GT	1
-tig00000001	201273	.	G	GT	25.2	PASS	TotalReads=66;AlleleCount=1;SupportFraction=0.588877	GT	1
-tig00000001	201554	.	G	GC	49.9	PASS	TotalReads=76;AlleleCount=1;SupportFraction=0.632029	GT	1
-tig00000001	201588	.	C	CG	125.4	PASS	TotalReads=75;AlleleCount=1;SupportFraction=0.660079	GT	1
-tig00000001	201712	.	C	CA	21.1	PASS	TotalReads=74;AlleleCount=1;SupportFraction=0.57415	GT	1
-tig00000001	200061	.	T	TA	22.4	PASS	TotalReads=67;AlleleCount=1;SupportFraction=0.583757	GT	1
-tig00000001	200180	.	C	CA	30.6	PASS	TotalReads=66;AlleleCount=1;SupportFraction=0.596279	GT	1
-tig00000001	200484	.	G	GA	25.3	PASS	TotalReads=63;AlleleCount=1;SupportFraction=0.569915	GT	1
-tig00000001	200672	.	T	TA	94.1	PASS	TotalReads=65;AlleleCount=1;SupportFraction=0.431464	GT	1
-tig00000001	200776	.	C	CA	82.3	PASS	TotalReads=67;AlleleCount=1;SupportFraction=0.362655	GT	1
-tig00000001	200796	.	T	TAA	117.1	PASS	TotalReads=66;AlleleCount=1;SupportFraction=0.544883	GT	1
-tig00000001	201007	.	A	AG	31.0	PASS	TotalReads=65;AlleleCount=1;SupportFraction=0.604821	GT	1
-tig00000001	201216	.	A	AT	85.8	PASS	TotalReads=67;AlleleCount=1;SupportFraction=0.457699	GT	1
-tig00000001	201273	.	G	GT	25.2	PASS	TotalReads=66;AlleleCount=1;SupportFraction=0.588877	GT	1
-tig00000001	201554	.	G	GC	49.9	PASS	TotalReads=76;AlleleCount=1;SupportFraction=0.632029	GT	1
-tig00000001	201588	.	C	CG	125.4	PASS	TotalReads=75;AlleleCount=1;SupportFraction=0.387616	GT	1
-tig00000001	201712	.	C	CA	21.1	PASS	TotalReads=74;AlleleCount=1;SupportFraction=0.57415	GT	1
-tig00000001	200061	.	T	TA	22.4	PASS	TotalReads=67;AlleleCount=1;SupportFraction=0.583757	GT	1
-tig00000001	200180	.	C	CA	30.6	PASS	TotalReads=66;AlleleCount=1;SupportFraction=0.596279	GT	1
-tig00000001	200484	.	G	GA	25.3	PASS	TotalReads=63;AlleleCount=1;SupportFraction=0.569915	GT	1
 tig00000001	200672	.	T	TA	94.1	PASS	TotalReads=65;AlleleCount=1;SupportFraction=0.431464	GT	1
 tig00000001	200776	.	C	CA	82.3	PASS	TotalReads=67;AlleleCount=1;SupportFraction=0.362655	GT	1
 tig00000001	200796	.	T	TAA	117.1	PASS	TotalReads=66;AlleleCount=1;SupportFraction=0.268565	GT	1