Mercurial > repos > bgruening > nanopolish_polya
comparison nanopolish_polya.xml @ 1:449e9aeded2d draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/nanopolish commit 25c22b467760e4784e199125292927bd2274a189-dirty
| author | bgruening |
|---|---|
| date | Sun, 23 Jun 2019 05:45:17 -0400 |
| parents | 7739a9b0dd83 |
| children | be717b65851f |
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| 0:7739a9b0dd83 | 1:449e9aeded2d |
|---|---|
| 1 <tool id="nanopolish_polya" name="Nanopolish polyA" version="0.1.0"> | 1 <tool id="nanopolish_polya" name="Nanopolish polyA" version="0.11.1"> |
| 2 <description>- Estimate the length of the poly-A tail on direct RNA reads.</description> | 2 <description>- Estimate the length of the poly-A tail on direct RNA reads.</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements" /> | 6 <expand macro="requirements" /> |
| 50 > polya_results.tsv | 50 > polya_results.tsv |
| 51 ]]></command> | 51 ]]></command> |
| 52 <inputs> | 52 <inputs> |
| 53 <!-- index inputs --> | 53 <!-- index inputs --> |
| 54 <param type="data" name="input_merged" format="fasta,fastq" label="Basecalled merged reads.fa"/> | 54 <param type="data" name="input_merged" format="fasta,fastq" label="Basecalled merged reads.fa"/> |
| 55 <param type="data" name="input_reads_raw" format="h5,fast5.tar.gz,fast5.tar.bz2,fast5.tar" label="Flat archive file of raw fast5 files"/> | 55 <param type="data" name="input_reads_raw" format="fast5.tar.gz,fast5.tar.bz2,fast5.tar" label="Flat archive file of raw fast5 files"/> |
| 56 | 56 |
| 57 <param type="data" argument="-b" format="bam" label="Reads aligned to the reference genome" /> | 57 <param type="data" argument="-b" format="bam" label="Reads aligned to the reference genome" /> |
| 58 <conditional name="reference_source"> | 58 <conditional name="reference_source"> |
| 59 <param name="reference_source_selector" type="select" label="Load reference genome from"> | 59 <param name="reference_source_selector" type="select" label="Load reference genome from"> |
| 60 <option value="cached">Local cache</option> | 60 <option value="cached">Local cache</option> |