changeset 4:d376944466bf draft default tip

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/nanopolish commit 23969530e590419a54d93156c5791e75a94a3837"
author bgruening
date Fri, 30 Jul 2021 06:29:09 +0000
parents 850347f034de
children
files test-data/all_fasta.loc test-data/all_fasta.loc.test tool-data/all_fasta.loc.sample
diffstat 3 files changed, 20 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/all_fasta.loc	Fri Jul 30 06:29:09 2021 +0000
@@ -0,0 +1,1 @@
+draft	draft	draft	${__HERE__}/draft.fa
\ No newline at end of file
--- a/test-data/all_fasta.loc.test	Fri May 07 06:48:02 2021 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,1 +0,0 @@
-draft	draft	draft	${__HERE__}/draft.fa
\ No newline at end of file
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/all_fasta.loc.sample	Fri Jul 30 06:29:09 2021 +0000
@@ -0,0 +1,19 @@
+#This file lists the locations and dbkeys of all the fasta files
+#under the "genome" directory (a directory that contains a directory
+#for each build). The script extract_fasta.py will generate the file
+#all_fasta.loc. This file has the format (white space characters are
+#TAB characters):
+#
+#<unique_build_id>	<dbkey>	<display_name>	<file_path>
+#
+#So, all_fasta.loc could look something like this:
+#
+#apiMel3	apiMel3	Honeybee (Apis mellifera): apiMel3	/path/to/genome/apiMel3/apiMel3.fa
+#hg19canon	hg19	Human (Homo sapiens): hg19 Canonical	/path/to/genome/hg19/hg19canon.fa
+#hg19full	hg19	Human (Homo sapiens): hg19 Full	/path/to/genome/hg19/hg19full.fa
+#
+#Your all_fasta.loc file should contain an entry for each individual
+#fasta file. So there will be multiple fasta files for each build,
+#such as with hg19 above.
+#
+#Arabidopsis_thaliana	Arabidopsis_thaliana_TAIR10	Arabidopsis_thaliana: TAIR 10	/export/home1/users/biocomp/chbernar/galaxy_testing/tool-data/from_personal_data/Fasta/TAIR10.fa