Mercurial > repos > bgruening > nanopolish_variants

view test-data/variants.vcf @ 4:de5b3d8f5b90 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/nanopolish commit 25c22b467760e4784e199125292927bd2274a189-dirty
author bgruening
date Sun, 23 Jun 2019 06:04:27 -0400
parents bc79b5b0fe04
children 63af3144371a
line wrap: on
line source

##fileformat=VCFv4.2
##nanopolish_window=tig00000001:200000-202000
##INFO=<ID=TotalReads,Number=1,Type=Integer,Description="The number of event-space reads used to call the variant">
##INFO=<ID=SupportFraction,Number=1,Type=Float,Description="The fraction of event-space reads that support the variant">
##INFO=<ID=BaseCalledReadsWithVariant,Number=1,Type=Integer,Description="The number of base-space reads that support the variant">
##INFO=<ID=BaseCalledFraction,Number=1,Type=Float,Description="The fraction of base-space reads that support the variant">
##INFO=<ID=AlleleCount,Number=1,Type=Integer,Description="The inferred number of copies of the allele">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	sample
tig00000001	200061	.	T	TA	22.4	PASS	TotalReads=67;AlleleCount=1;SupportFraction=0.583757	GT	1
tig00000001	200180	.	C	CA	30.6	PASS	TotalReads=66;AlleleCount=1;SupportFraction=0.596279	GT	1
tig00000001	200484	.	G	GA	25.3	PASS	TotalReads=63;AlleleCount=1;SupportFraction=0.569915	GT	1
tig00000001	200672	.	T	TA	94.1	PASS	TotalReads=65;AlleleCount=1;SupportFraction=0.431464	GT	1
tig00000001	200776	.	C	CA	82.3	PASS	TotalReads=67;AlleleCount=1;SupportFraction=0.362655	GT	1
tig00000001	200796	.	T	TAA	117.1	PASS	TotalReads=66;AlleleCount=1;SupportFraction=0.268565	GT	1
tig00000001	201007	.	A	AG	31.0	PASS	TotalReads=65;AlleleCount=1;SupportFraction=0.604821	GT	1
tig00000001	201216	.	A	AT	85.8	PASS	TotalReads=67;AlleleCount=1;SupportFraction=0.457699	GT	1
tig00000001	201273	.	G	GT	25.2	PASS	TotalReads=66;AlleleCount=1;SupportFraction=0.588877	GT	1
tig00000001	201554	.	G	GC	49.9	PASS	TotalReads=76;AlleleCount=1;SupportFraction=0.632029	GT	1
tig00000001	201588	.	C	CG	125.4	PASS	TotalReads=75;AlleleCount=1;SupportFraction=0.387616	GT	1
tig00000001	201712	.	C	CA	21.1	PASS	TotalReads=74;AlleleCount=1;SupportFraction=0.57415	GT	1