# HG changeset patch
# User bgruening
# Date 1675977898 0
# Node ID 733eab97b9797e66b1fe0466fc033de53c4e4f7c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/nextdenovo commit 5890a5b5b51cfe2dc4a1bbe1866ce508a9f9ce9f
diff -r 000000000000 -r 733eab97b979 macros.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml Thu Feb 09 21:24:58 2023 +0000
@@ -0,0 +1,27 @@
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+ 2.5.0
+ 0
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+ nextdenovo
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+ nextdenovo
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+ @misc{githubNextDenovo,
+ author = {Jiang, Hu},
+ year = {2022},
+ title = {NextDenovo},
+ publisher = {GitHub},
+ journal = {GitHub repository},
+ url = {https://github.com/Nextomics/NextDenovo}}
+
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diff -r 000000000000 -r 733eab97b979 nextdenovo.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/nextdenovo.xml Thu Feb 09 21:24:58 2023 +0000
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+
+ string graph-based de novo assembler for long reads
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+ macros.xml
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+ nextDenovo --version
+ './input.fofn' &&
+ cat '${configfile}' | sed -e "s/cores/\${GALAXY_SLOTS:-4}/g" | sed -e "s|memory|\$((\${GALAXY_MEMORY_MB:-8192}/1024))|g" > './configfile' &&
+ nextDenovo './configfile'
+ ]]>
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+ [0-9KMGkmg.]+
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+ [0-9KMGkmg]+
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+ task != 'correct'
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\ No newline at end of file
diff -r 000000000000 -r 733eab97b979 test-data/nanopore.fasta.gz
Binary file test-data/nanopore.fasta.gz has changed