Mercurial > repos > bgruening > openbabel

diff filter/multi_obgrep.xml @ 2:125da3a296ca draft default tip
Uploaded
author: bgruening
date: Wed, 15 Jul 2015 12:13:08 -0400
parents: 527ecd2fc500
--- a/filter/multi_obgrep.xml	Wed Aug 21 03:06:02 2013 -0400
+++ b/filter/multi_obgrep.xml	Wed Jul 15 12:13:08 2015 -0400
@@ -4,6 +4,7 @@
         <requirement type="package" version="2.3.2">openbabel</requirement>
     </requirements>
     <command interpreter="python">
+<![CDATA[
 
     multi_obgrep.py
         -i $infile
@@ -15,8 +16,9 @@
         $only_name
         $full_match
         $number_of_matches
-        --processors 10
+        --processors "\${GALAXY_SLOTS:-12}"
 
+]]>
     </command>
     <inputs>
         <param name="infile" type="data" format="sdf,mol,mol2,cml,inchi,smi" label="Compound File" help="Specify a compound file in SDF Format"/>
@@ -35,6 +37,7 @@
         </test>
     </tests>
     <help>
+<![CDATA[
 
 .. class:: infomark
 
@@ -80,5 +83,6 @@
 
 .. _`Open Babel`: http://openbabel.org/wiki/Main_Page
 
+]]>
     </help>
 </tool>