Mercurial > repos > bgruening > openbabel

diff filter/ob_remSmall.xml @ 2:125da3a296ca draft default tip
Uploaded
author: bgruening
date: Wed, 15 Jul 2015 12:13:08 -0400
parents: 527ecd2fc500
--- a/filter/ob_remSmall.xml	Wed Aug 21 03:06:02 2013 -0400
+++ b/filter/ob_remSmall.xml	Wed Jul 15 12:13:08 2015 -0400
@@ -5,6 +5,7 @@
         <requirement type="package" version="2.3.2">openbabel</requirement>
     </requirements>
     <command>
+<![CDATA[
     obabel
       -i"${infile.ext}"
       "${infile}"
@@ -12,7 +13,8 @@
       -O "${outfile}"
       --filter "atoms > $cutoff"
       -e
-      2>&#38;1
+      2>&1
+]]>
     </command>
     <inputs>
         <param name="infile" format="sdf,mol,mol2,cml,inchi,smi" type="data" label="Molecular input file" />
@@ -29,6 +31,7 @@
         </test>
     </tests>
     <help>
+<![CDATA[
 
 .. class:: infomark
 
@@ -66,5 +69,6 @@
 
 .. _`Open Babel`: http://openbabel.org/wiki/Main_Page
 
+]]>
     </help>
 </tool>