diff filter/ob_grep.xml @ 2:125da3a296ca draft default tip

Uploaded

--- a/filter/ob_grep.xml	Wed Aug 21 03:06:02 2013 -0400
+++ b/filter/ob_grep.xml	Wed Jul 15 12:13:08 2015 -0400
@@ -5,6 +5,7 @@
         <requirement type="package" version="2.3.2">openbabel</requirement>
     </requirements>
     <command>
+<![CDATA[
         ## The command is a Cheetah template which allows some Python based syntax.
         ## Lines starting hash hash are comments. Galaxy will turn newlines into spaces
         obgrep
@@ -20,7 +21,8 @@
         -i ${infile.ext}
         "${smarts_pattern}"
         "${infile}"
-        > "${outfile}" 2>&#38;1
+        > "${outfile}" 2>&1
+]]>
     </command>
     <inputs>
         <param name="infile" type="data" format="sdf,mol,mol2,cml,inchi,smi" label="Compound File" help="Specify a compound file in SDF Format."/>
@@ -48,6 +50,7 @@
     </test>
     </tests>
     <help>
+<![CDATA[
 
 .. class:: infomark
 
@@ -94,5 +97,6 @@
 
 .. _`Open Babel`: http://openbabel.org/wiki/Main_Page
 
+]]>
     </help>
 </tool>