diff modify/ob_addh.xml @ 2:125da3a296ca draft default tip

Uploaded

--- a/modify/ob_addh.xml	Wed Aug 21 03:06:02 2013 -0400
+++ b/modify/ob_addh.xml	Wed Jul 15 12:13:08 2015 -0400
@@ -5,12 +5,14 @@
         <requirement type="package" version="2.3.2">openbabel</requirement>
     </requirements>
     <command interpreter="python">
+<![CDATA[
     ob_addh.py
       -i "${infile}"
       --iformat "${infile.ext}"
       -o "${outfile}"
       $polar
       --pH "${pH_value}"
+]]>
     </command>
     <inputs>
         <param name="infile" type="data" format="sdf,smi,mol,mol2,cml,inchi" label="Select input file"/>
@@ -29,6 +31,7 @@
         </test>
     </tests>
     <help>
+<![CDATA[
 
 .. class:: infomark
 
@@ -55,7 +58,7 @@
 
 .. class:: warningmark
 
-**Hint** 
+**Hint**
 
 To avoid possible crashes, only molecules with more than five heavy atoms are parsed.
 
@@ -63,7 +66,7 @@
 
 .. class:: infomark
 
-**Output** 
+**Output**
 
 Same output format as the input format.
 
@@ -81,5 +84,6 @@
 
 .. _`Pybel: a Python wrapper for the OpenBabel cheminformatics toolkit`: http://www.biomedcentral.com/content/pdf/1752-153X-2-5.pdf
 
+]]>
     </help>
 </tool>