comparison ob_convert.xml @ 12:1c66bf08f687 draft

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/openbabel commit 944ea4bb8a9cd4244152a4a4fecd0485fabc2ad0"

11:b59c91adeac1

<tool id="openbabel_compound_convert" name="Compound conversion" version="@VERSION@.0">
    <description>- interconvert between various chemistry and molecular modeling data files</description>
    <!--<parallelism method="multi" split_inputs="infile" split_mode="to_size" split_size="10000" shared_inputs="" merge_outputs="outfile"></parallelism>
        We can't use that currently, because a few output-datatypes, like the fastsearch index do not support merging. We need to patch galaxy to not abort in such a case
        and run the job in non-multi mode.
    -->
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <command detect_errors="aggressive">
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12:1c66bf08f687

<tool id="openbabel_compound_convert" name="Compound conversion" version="@TOOL_VERSION@+galaxy@GALAXY_VERSION@">
    <description>- interconvert between various chemistry and molecular modeling data files</description>
    <!--<parallelism method="multi" split_inputs="infile" split_mode="to_size" split_size="10000" shared_inputs="" merge_outputs="outfile"></parallelism>
        We can't use that currently, because a few output-datatypes, like the fastsearch index do not support merging. We need to patch galaxy to not abort in such a case
        and run the job in non-multi mode.
    -->
    <macros>
        <import>macros.xml</import>
        <token name="@GALAXY_VERSION@">0</token>
    </macros>
    <expand macro="requirements"/>
    <command detect_errors="aggressive">
<![CDATA[