comparison ob_remIons.py @ 11:78640d0127ce draft

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/openbabel commit 944ea4bb8a9cd4244152a4a4fecd0485fabc2ad0"

10:f27e2eaffb5f

    Output: Molecule file with removed ions and fragments.
    Copyright 2012, Bjoern Gruening and Xavier Lucas
"""
import sys, os
import argparse
import openbabel
openbabel.obErrorLog.StopLogging()
import pybel

def parse_command_line():
    parser = argparse.ArgumentParser()
    parser.add_argument('-iformat', default='sdf' , help='input file format')
    parser.add_argument('-i', '--input', required=True, help='input file name')

11:78640d0127ce

    Output: Molecule file with removed ions and fragments.
    Copyright 2012, Bjoern Gruening and Xavier Lucas
"""
import sys, os
import argparse

from openbabel import openbabel, pybel
openbabel.obErrorLog.StopLogging()

def parse_command_line():
    parser = argparse.ArgumentParser()
    parser.add_argument('-iformat', default='sdf' , help='input file format')
    parser.add_argument('-i', '--input', required=True, help='input file name')