diff ob_grep.xml @ 14:985ab0acd514 draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/openbabel commit d9c51279c061a1da948a2582d5b502ca7573adbf

--- a/ob_grep.xml	Tue Nov 10 20:32:42 2020 +0000
+++ b/ob_grep.xml	Thu Aug 15 11:05:06 2024 +0000
@@ -3,8 +3,9 @@
     <!--parallelism method="multi" split_inputs="infile" split_mode="to_size" split_size="10000" shared_inputs="" merge_outputs="outfile"></parallelism-->
     <macros>
         <import>macros.xml</import>
-        <token name="@GALAXY_VERSION@">0</token>
+        <token name="@GALAXY_VERSION@">1</token>
     </macros>
+    <options sanitize="False"/>
     <expand macro="requirements"/>
     <command>
 <![CDATA[
@@ -59,7 +60,6 @@
         <param name="full_match" type="boolean" label="Full match" help="Print matching molecules only when the number of heavy atoms equals the number of atoms in the SMARTS pattern" truevalue="-f" falsevalue="" checked="false" />
         <param name="number_of_matches" type="boolean" label="Print the number of matches" truevalue="-c" falsevalue="" checked="false" />
     </inputs>
-    <options sanitize="False"/>
     <outputs>
         <expand macro="output_like_input"/>
     </outputs>
@@ -92,8 +92,8 @@
 
 The search query can be submitted either as a single SMARTS pattern or as a file containing multiple SMARTS patterns.
 
-.. _Obgrep: http://openbabel.org/wiki/Obgrep
-.. _here: http://openbabel.org/wiki/SMARTS
+.. _Obgrep: https://open-babel.readthedocs.io/en/latest/Command-line_tools/babel.html#filtering-molecules-from-a-multimolecule-file
+.. _here: https://open-babel.readthedocs.io/en/latest/Command-line_tools/babel.html#smarts-descriptor
 
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