comparison ob_filter.py @ 12:171c94786a56 draft

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/openbabel commit 944ea4bb8a9cd4244152a4a4fecd0485fabc2ad0"
author bgruening
date Tue, 28 Jul 2020 08:32:24 -0400
parents c4abd2c7d5f6
children bd678d7db2ae
comparison
equal deleted inserted replaced
11:c4abd2c7d5f6 12:171c94786a56
8 """ 8 """
9 import sys, os 9 import sys, os
10 import argparse 10 import argparse
11 import cheminfolib 11 import cheminfolib
12 import json 12 import json
13 import pybel
14 import shlex, subprocess 13 import shlex, subprocess
15 14
15 from openbabel import pybel
16 cheminfolib.pybel_stop_logging() 16 cheminfolib.pybel_stop_logging()
17 17
18 def parse_command_line(): 18 def parse_command_line():
19 parser = argparse.ArgumentParser() 19 parser = argparse.ArgumentParser()
20 parser.add_argument('-i', '--input', help='Input file name') 20 parser.add_argument('-i', '--input', help='Input file name')