diff pg-import.xml @ 0:2c43bac3579f draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tools/pgtools commit ab93c4c70fa487e55a24863a7786e102e7d92272
author bgruening
date Wed, 24 Apr 2019 06:11:25 -0400
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/pg-import.xml	Wed Apr 24 06:11:25 2019 -0400
@@ -0,0 +1,36 @@
+<tool id="pg_import" name="Postgresql" version="@PG_VERSION@">
+    <description>import sql dump</description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="requirements" />
+    <command detect_errors="aggressive"><![CDATA[
+            @PG_SETUP@ &&
+            ls -l ./postgresql &&
+            @PSQL@ -f '$infile' -L logfile.log &&
+            @PG_STOP@ &&
+            @ARCHIVE_DATABASE@ &&
+            cat logfile.log
+    ]]>
+    </command>
+    <inputs>
+        <param format="txt" name="infile" type="data" label="Input SQL dump" />
+    </inputs>
+    <outputs>
+        <data format="postgresql" name="outfile" from_work_dir="postgresql_out.tar.bz2" />
+    </outputs>
+    <tests>
+        <test>
+            <param name="infile" value="init-galaxy-db.sql.in" ftype="txt" />
+            <output file="pg_import_result1.pg.tar.bz2" name="outfile" ftype="postgresql" compare="sim_size" delta="200000" />
+        </test>
+    </tests>
+    <help>
+<![CDATA[
+
+@HELP_FOOTER@
+
+]]>
+    </help>
+    <expand macro="citations" />
+</tool>