Mercurial > repos > bgruening > pileometh

view tool_dependencies.xml @ 6:906db57d5d65 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pileometh commit 08bee869cbf7be7a70e2d7921ff42539bf5acd4d
author bgruening
date Tue, 13 Jun 2017 01:01:31 -0400
parents ccc755bdf11d
children
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<?xml version="1.0"?>
<tool_dependency>
    <package name="methyldackel" version="0.3.0">
        <install version="1.0">
            <actions>
                <action target_filename="MethylDackel-0.3.0.tar.gz" type="download_by_url">https://github.com/dpryan79/MethylDackel/archive/0.3.0.tar.gz</action>
                <action type="shell_command">make</action>
                <action type="shell_command">mkdir $INSTALL_DIR/bin</action>
                <action type="shell_command">make install prefix=$INSTALL_DIR/bin/</action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin/</environment_variable>
                    <environment_variable name="METHYLDACKEL_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
            <readme>
        <![CDATA[
            MethylDackel: A tool for processing bisulfite sequencing alignments.
            See https://github.com/dpryan79/MethylDackel/
        ]]>
        </readme>
    </package>
</tool_dependency>