Mercurial > repos > bgruening > pileometh

view tool_dependencies.xml @ 3:f112bf3dd5ff draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pileometh commit 5468fb89708be679e4e580074734e671f60a9648
author bgruening
date Mon, 13 Feb 2017 22:44:01 -0500
parents d1b66015effd
children b327b539ec58
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<?xml version="1.0"?>
<tool_dependency>
    <package name="methyldackel" version="0.2.1">
        <install version="1.0">
            <actions>
                <action target_filename="MethylDackel-0.2.1.tar.gz" type="download_by_url">https://github.com/dpryan79/MethylDackel/archive/0.2.1.tar.gz</action>
                <action type="shell_command">make</action>
                <action type="shell_command">make install prefix=$INSTALL_DIR/bin</action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable name="METHYLDACKEL_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
            <readme>
        <![CDATA[
            MethylDackel: A tool for processing bisulfite sequencing alignments.
            See https://github.com/dpryan79/MethylDackel/
        ]]>
        </readme>
    </package>
</tool_dependency>