view paracords_plot.xml @ 1:7b21a9b5922f draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 7ba5d8f0e920dccbc82588e4f4a7b9039dc3ea36

<tool id="plotly_parallel_coordinates_plot" name="Parallel Coordinates Plot" version="0.1">
    <description>of tabular data</description>
    <requirements>
        <requirement type="package" version="3.6">python</requirement>
        <requirement type="package" version="0.22.0">pandas</requirement>
        <requirement type="package" version="3.1.1">plotly</requirement>
    </requirements>
    <version_command>echo $version</version_command>
    <command detect_errors="aggressive"><![CDATA[
    python '$__tool_directory__/paracords_plot.py'
        -i '$infile'
        -d '$col_dimensions'
        -t '$categorized_datatype'
        -c '$col_color'
]]>
    </command>
    <inputs>
        <param name="infile" type="data" format="tabular" label="Select data file :"/>
        <param name="col_dimensions" multiple="true" type="data_column" data_ref="infile" use_header_names="true" display="checkboxes" label="Select the columns for dimentions:"/>
        <param name="categorized_datatype" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" label="All the dimensions in categorized datatype:"/>
        <param name="col_color" type="data_column" data_ref="infile" use_header_names="true" label="Select a column containg the values for coloring:" help="e.g. mean_test_score"/>
    </inputs>

    <outputs>
        <data name="output" format="html" from_work_dir="output.html" label="Plot visualization of tabular data on ${on_string}"/>
    </outputs>
    <tests>
        <test>
            <param name="infile" value="parcoords01.tabular" ftype="tabular"/>
            <param name="col_dimensions" value="4,5"/>
            <param name="categorized_datatype" value="false"/>
            <param name="col_color" value="3"/>
            <output name="output" file="parcoords_plot01.html" compare="sim_size"/>
        </test>
        <test>
            <param name="infile" value="parcoords02.tabular" ftype="tabular"/>
            <param name="col_dimensions" value="4,5"/>
            <param name="categorized_datatype" value="false"/>
            <param name="col_color" value="3"/>
            <output name="output" file="parcoords_plot02.html" compare="sim_size"/>
        </test>
    </tests>
    <help><![CDATA[
**What it does**


Produce a `parallel coordinates plot <https://plot.ly/python/parallel-coordinates-plot/>`_ from a tabular file.
Multiple columns are chosen for dimensions and a single column for coloring. The plot is buried in a html file which
provides rich interactive features. Image can be saved in various format, such as 'png', 'svg', 'jpeg' and so on.


    ]]>
    </help>
</tool>