Mercurial > repos > bgruening > racon
comparison racon.xml @ 6:d865b62f501c draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/racon commit 115f451c7c9e7e30fd1b8df26bfc5362832a6eb7"
| author | bgruening |
|---|---|
| date | Sat, 19 Mar 2022 22:03:50 +0000 |
| parents | cd06929b224b |
| children | e100a765370e |
comparison
equal
deleted
inserted
replaced
| 5:7c847ec300b8 | 6:d865b62f501c |
|---|---|
| 51 -g $g | 51 -g $g |
| 52 > racon_polished_consensus.fa | 52 > racon_polished_consensus.fa |
| 53 ]]></command> | 53 ]]></command> |
| 54 <inputs> | 54 <inputs> |
| 55 <param type="data" name="reads" format="fasta,fasta.gz,fastq,fastq.gz" label="Sequences"/> | 55 <param type="data" name="reads" format="fasta,fasta.gz,fastq,fastq.gz" label="Sequences"/> |
| 56 <param type="data" name="overlaps" format="sam,tabular" label="Overlaps"/> | 56 <param type="data" name="overlaps" format="paf,sam,tabular" label="Overlaps"/> |
| 57 <param type="data" name="corrected_reads" format="fasta,fasta.gz,fastq,fastq.gz" label="Target sequences"/> | 57 <param type="data" name="corrected_reads" format="fasta,fasta.gz,fastq,fastq.gz" label="Target sequences"/> |
| 58 | 58 |
| 59 <param argument="-u" type="boolean" truevalue="-u" falsevalue="" label="output unpolished target sequences" /> | 59 <param argument="-u" type="boolean" truevalue="-u" falsevalue="" label="output unpolished target sequences" /> |
| 60 <param argument="-f" type="boolean" truevalue="-f" falsevalue="" label="perform fragment correction instead of contig polishing" /> | 60 <param argument="-f" type="boolean" truevalue="-f" falsevalue="" label="perform fragment correction instead of contig polishing" /> |
| 61 <param argument="-w" type="integer" value="500" label="Size of window on which POA is performed" /> | 61 <param argument="-w" type="integer" value="500" label="Size of window on which POA is performed" /> |