Mercurial > repos > bgruening > repeat_masker
comparison repeatmasker.xml @ 5:8404aa79a631 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 9c21a3564ebac92db23e2d827dabe6b05c56ad32
| author | iuc |
|---|---|
| date | Wed, 23 May 2018 14:24:14 -0400 |
| parents | 04f5c3d7448e |
| children | 65ab76d58c41 |
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| 4:04f5c3d7448e | 5:8404aa79a631 |
|---|---|
| 64 #end if | 64 #end if |
| 65 #if $advanced.poly == '-poly': | 65 #if $advanced.poly == '-poly': |
| 66 sed -r 's/^ *// ; s/ *$//; s/\+ //; s/ +/\t/g' rm_input.fasta.polyout >'${output_polymorphic}' && | 66 sed -r 's/^ *// ; s/ *$//; s/\+ //; s/ +/\t/g' rm_input.fasta.polyout >'${output_polymorphic}' && |
| 67 #end if | 67 #end if |
| 68 #end if | 68 #end if |
| 69 mv rm_input.fasta.cat '${output_repeat_catalog}' | 69 if [ -f 'rm_input.fasta.cat.gz' ]; then |
| 70 zcat 'rm_input.fasta.cat.gz' > '${output_repeat_catalog}'; | |
| 71 else | |
| 72 mv rm_input.fasta.cat '${output_repeat_catalog}'; | |
| 73 fi | |
| 70 ]]> | 74 ]]> |
| 71 </command> | 75 </command> |
| 72 | 76 |
| 73 <inputs> | 77 <inputs> |
| 74 <param name="input_fasta" type="data" format="fasta" label="Genomic DNA" /> | 78 <param name="input_fasta" type="data" format="fasta" label="Genomic DNA" /> |