Mercurial > repos > bgruening > repeat_masker

comparison test-data/small_dfam.fasta.stats @ 10:bfc70c8cc5ca draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
author iuc
date Fri, 11 Dec 2020 22:26:02 +0000
parents
children 72aade318318
comparison
equal deleted inserted replaced
9:438f65cb1d14 10:bfc70c8cc5ca
1 ==================================================
2 file name: rm_input.fasta
3 sequences: 1
4 total length: 14220 bp (14220 bp excl N/X-runs)
5 GC level: 39.94 %
6 bases masked: 449 bp ( 3.16 %)
7 ==================================================
8 number of length percentage
9 elements* occupied of sequence
10 --------------------------------------------------
11 SINEs: 0 0 bp 0.00 %
12 ALUs 0 0 bp 0.00 %
13 MIRs 0 0 bp 0.00 %
14
15 LINEs: 1 71 bp 0.50 %
16 LINE1 0 0 bp 0.00 %
17 LINE2 1 71 bp 0.50 %
18 L3/CR1 0 0 bp 0.00 %
19
20 LTR elements: 0 0 bp 0.00 %
21 ERVL 0 0 bp 0.00 %
22 ERVL-MaLRs 0 0 bp 0.00 %
23 ERV_classI 0 0 bp 0.00 %
24 ERV_classII 0 0 bp 0.00 %
25
26 DNA elements: 0 0 bp 0.00 %
27 hAT-Charlie 0 0 bp 0.00 %
28 TcMar-Tigger 0 0 bp 0.00 %
29
30 Unclassified: 0 0 bp 0.00 %
31
32 Total interspersed repeats: 71 bp 0.50 %
33
34
35 Small RNA: 0 0 bp 0.00 %
36
37 Satellites: 0 0 bp 0.00 %
38 Simple repeats: 7 378 bp 2.66 %
39 Low complexity: 0 0 bp 0.00 %
40 ==================================================
41
42 * most repeats fragmented by insertions or deletions
43 have been counted as one element
44 Runs of >=20 X/Ns in query were excluded in % calcs
45
46
47 The query species was assumed to be human
48 RepeatMasker version 4.1.1 , default mode
49
50 run with rmblastn version 2.10.0+
51