Mercurial > repos > bgruening > repeat_masker
view test-data/small.fasta.align @ 4:04f5c3d7448e draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
| author | iuc |
|---|---|
| date | Fri, 04 May 2018 07:59:50 -0400 |
| parents | bdfc22c1c3e3 |
| children |
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18 0.00 0.00 0.00 scaffold_1 613 632 (13519) (GT)n#Simple_repeat 1 20 (0) m_b1s252i0 1 scaffold_1 613 GTGTGTGTGTGTGTGTGTGT 632 (GT)n#Simple_ 1 GTGTGTGTGTGTGTGTGTGT 20 Matrix = Unknown Transitions / transversions = 1.00 (0/0) Gap_init rate = 0.00 (0 / 19), avg. gap size = 0.0 (0 / 0) 16 18.30 2.22 2.22 scaffold_1 780 824 (13327) (ATAATA)n#Simple_repeat 1 45 (0) m_b1s252i1 2 scaffold_1 780 ATATTAAT-ATACTAAATAATGATAATATTAATTCTAATAATGATA 824 v - v - i v vv i (ATAATA)n#Sim 1 ATAATAATAATAAT-AATAATAATAATAATAATAATAATAATAATA 45 Matrix = Unknown Transitions / transversions = 0.40 (2/5) Gap_init rate = 0.05 (2 / 44), avg. gap size = 1.00 (2 / 2) 12 23.88 4.55 0.00 scaffold_1 2231 2274 (11877) (CAGA)n#Simple_repeat 1 46 (0) m_b1s252i2 3 scaffold_1 2231 CAGA-AAACAGTCAGCCAATCAGA-GGACAGACTCAGAGACAGACA 2274 - i v v iv -i vv v (CAGA)n#Simpl 1 CAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACA 46 Matrix = Unknown Transitions / transversions = 0.50 (3/6) Gap_init rate = 0.05 (2 / 43), avg. gap size = 1.00 (2 / 2) 15 18.42 10.20 0.00 scaffold_1 4853 4901 (9250) (TC)n#Simple_repeat 1 54 (0) m_b1s252i3 4 scaffold_1 4853 TCTATTTTTCTCTCTCTCTCT-TCGGTCAGTTTCTCT-TCT-TCTC-CTC 4898 v i i - vv vv i - - - (TC)n#Simple_ 1 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 50 scaffold_1 4899 -CTC 4901 - (TC)n#Simple_ 51 TCTC 54 Matrix = Unknown Transitions / transversions = 0.60 (3/5) Gap_init rate = 0.10 (5 / 48), avg. gap size = 1.00 (5 / 5) 13 19.07 1.82 7.69 scaffold_1 6230 6284 (7867) (TAATTAA)n#Simple_repeat 1 52 (0) m_b1s252i4 5 scaffold_1 6230 TAATGAGT-ATTACTAATTAATAATTGGATGAGTTTATGAATTCATCATT 6278 v i - v -i - i v - v v (TAATTAA)n#Si 1 TAATTAATAATTAATAATTAATAATT-AAT-AATTAAT-AATTAATAATT 47 scaffold_1 6279 AAATAA 6284 - (TAATTAA)n#Si 48 -AATAA 52 Matrix = Unknown Transitions / transversions = 0.60 (3/5) Gap_init rate = 0.09 (5 / 54), avg. gap size = 1.00 (5 / 5) 15 28.31 0.00 3.51 scaffold_1 6548 6606 (7545) (GACA)n#Simple_repeat 1 57 (0) m_b1s252i5 6 scaffold_1 6548 GACAGAGAGATAAACAGACAGACATGGAAACAGAGGGACATAGAAAACAA 6597 v i i viv i vi v -v i - (GACA)n#Simpl 1 GACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGA-CAGAC-A 48 scaffold_1 6598 GACAGAGAG 6606 v (GACA)n#Simpl 49 GACAGACAG 57 Matrix = Unknown Transitions / transversions = 0.86 (6/7) Gap_init rate = 0.03 (2 / 58), avg. gap size = 1.00 (2 / 2) 67 2.94 1.43 0.00 scaffold_1 11981 12050 (2170) (CT)n#Simple_repeat 1 71 (0) c_b1s251i0 7 scaffold_1 11981 CTCTCTCTCTCTCCCTCTCCCTCTC-CTCTCTCTCTCTCTCTCTCTCTCT 12029 i i - (CT)n#Simple_ 1 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 50 scaffold_1 12030 CTCTCTCTCTCTCTCTCTCTC 12050 (CT)n#Simple_ 51 CTCTCTCTCTCTCTCTCTCTC 71 Matrix = Unknown Transitions / transversions = 1.00 (2/0) Gap_init rate = 0.01 (1 / 69), avg. gap size = 1.00 (1 / 1) 19 15.37 2.78 0.00 scaffold_1 12078 12113 (2107) (CT)n#Simple_repeat 1 37 (0) m_b1s252i6 8 scaffold_1 12078 CTCGCTCTCTCACTCTCTCCCTCTCTC-CCCACTCTC 12113 v v i - i v (CT)n#Simple_ 1 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 37 Matrix = Unknown Transitions / transversions = 0.67 (2/3) Gap_init rate = 0.03 (1 / 35), avg. gap size = 1.00 (1 / 1)