view test-data/small_dfam.fasta.stats @ 13:3f987772e283 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/repeatmasker commit 66afa14fe355603b05936eb4575d4b65a9861838"
author iuc
date Thu, 21 Oct 2021 15:49:31 +0000
parents 72aade318318
children 7563ea7a922d
line wrap: on
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==================================================
file name: rm_input.fasta           
sequences:             1
total length:      14220 bp  (14220 bp excl N/X-runs) 
GC level:         39.94 %
bases masked:        449 bp ( 3.16 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
SINEs:                0            0 bp    0.00 %
      ALUs            0            0 bp    0.00 %
      MIRs            0            0 bp    0.00 %

LINEs:                1           71 bp    0.50 %
      LINE1           0            0 bp    0.00 %
      LINE2           1           71 bp    0.50 %
      L3/CR1          0            0 bp    0.00 %

LTR elements:         0            0 bp    0.00 %
      ERVL            0            0 bp    0.00 %
      ERVL-MaLRs      0            0 bp    0.00 %
      ERV_classI      0            0 bp    0.00 %
      ERV_classII     0            0 bp    0.00 %

DNA elements:         0            0 bp    0.00 %
     hAT-Charlie      0            0 bp    0.00 %
     TcMar-Tigger     0            0 bp    0.00 %

Unclassified:         0            0 bp    0.00 %

Total interspersed repeats:       71 bp    0.50 %


Small RNA:            0            0 bp    0.00 %

Satellites:           0            0 bp    0.00 %
Simple repeats:       7          378 bp    2.66 %
Low complexity:       0            0 bp    0.00 %
==================================================

* most repeats fragmented by insertions or deletions
  have been counted as one element
  Runs of >=20 X/Ns in query were excluded in % calcs


The query species was assumed to be human         
RepeatMasker version 4.1.2-p1 , default mode
                                     
run with rmblastn version 2.10.0+
FamDB: CONS-Dfam_3.3