# HG changeset patch
# User iuc
# Date 1527099854 14400
# Node ID 8404aa79a631de6d8e5db5dac358089cdad5c3fe
# Parent  04f5c3d7448ed3157454fb7b46aa76f61312e823
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 9c21a3564ebac92db23e2d827dabe6b05c56ad32

diff -r 04f5c3d7448e -r 8404aa79a631 repeatmasker.xml
--- a/repeatmasker.xml	Fri May 04 07:59:50 2018 -0400
+++ b/repeatmasker.xml	Wed May 23 14:24:14 2018 -0400
@@ -66,7 +66,11 @@
         sed -r 's/^ *// ; s/ *$//; s/\+ //; s/ +/\t/g' rm_input.fasta.polyout >'${output_polymorphic}' &&
       #end if
     #end if
-    mv rm_input.fasta.cat '${output_repeat_catalog}'
+    if [ -f 'rm_input.fasta.cat.gz' ]; then
+      zcat 'rm_input.fasta.cat.gz' > '${output_repeat_catalog}';
+    else
+      mv rm_input.fasta.cat '${output_repeat_catalog}';
+    fi
     ]]>
   </command>