Mercurial > repos > bgruening > rnaz_annotate
comparison test-data/unknown.aln.window @ 0:e123d5c6f489 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_team/rnaz commit d261ddb93500e1ea309845fa3989c87c6312583d-dirty
| author | bgruening |
|---|---|
| date | Wed, 30 Jan 2019 04:12:06 -0500 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:e123d5c6f489 |
|---|---|
| 1 CLUSTAL W(1.81) multiple sequence alignment | |
| 2 | |
| 3 | |
| 4 hg17.chr1/0-120 TACAGCAGCTGCTATTGCTTATGGCCTGGATAAGAGGGAGGGGGAGAAGAACATCCTGGT | |
| 5 canFam1.chr9/0-120 TACAGCAGCTGCTATTGCTTACGGCTTGGATAAGAGGGAAGGGGAGAAGAATATCCTGGT | |
| 6 mm5.chr2/0-120 TACAGCAGCTGCTATTGCATATGGCCTGGATAAGAGAGAGGGAGAGAAGAACATCCTTGT | |
| 7 galGal2.chr17/0-120 AACTGCTGCTGCAATTGCATACGGATTGGACAAGAGAGAGGGTGAAAAGAACATCCTTGT | |
| 8 fr1.chrUn/0-120 AACCGCTGCTGCCATTGCTTATGGTCTGGACAAAAAGGACGGCGAGAAGAACATCCTCGT | |
| 9 danRer1.chr11/0-120 TACGGCGGCTGCCATTGCATACGGTCTGGACAAGAGGGACGGAGAGAAAAACATCCTGGT | |
| 10 | |
| 11 | |
| 12 hg17.chr1/0-120 GTTTGACCTGGGTGGTGGAACCTTTGATGTGTCTCTTCTCACCATTGACAATGGTGTCTT | |
| 13 canFam1.chr9/0-120 GTTTGACCTGGGTGGTGGAACTTTTGATGTGTCTCTTCTCACCATTGACAATGGTGTCTT | |
| 14 mm5.chr2/0-120 GTTTGACCTGGGTGGCGGCACCTTCGATGTGTCTCTTCTCACCATTGACAATGGTGTCTT | |
| 15 galGal2.chr17/0-120 ATTTGACCTGGGTGGTGGAACTTTTGATGTCTCCCTCCTGACAATTGACAACGGAGTCTT | |
| 16 fr1.chrUn/0-120 GTTCGATCTCGGTGGCGGCACCTTCGACGTGTCTCTGCTCACCATTGACAACGGTGTGTT | |
| 17 danRer1.chr11/0-120 GTTCGATCTGGGTGGTGGCACCTTTGACGTGTCTCTGCTGACCATCGATAACGGCGTGTT | |
| 18 | |
| 19 | |
| 20 CLUSTAL W(1.81) multiple sequence alignment | |
| 21 | |
| 22 | |
| 23 hg17.chr1_rev/0-120 AAGACACCATTGTCAATGGTGAGAAGAGACACATCAAAGGTTCCACCACCCAGGTCAAAC | |
| 24 canFam1.chr9_rev/0-120 AAGACACCATTGTCAATGGTGAGAAGAGACACATCAAAAGTTCCACCACCCAGGTCAAAC | |
| 25 mm5.chr2_rev/0-120 AAGACACCATTGTCAATGGTGAGAAGAGACACATCGAAGGTGCCGCCACCCAGGTCAAAC | |
| 26 galGal2.chr17_rev/0-120 AAGACTCCGTTGTCAATTGTCAGGAGGGAGACATCAAAAGTTCCACCACCCAGGTCAAAT | |
| 27 fr1.chrUn_rev/0-120 AACACACCGTTGTCAATGGTGAGCAGAGACACGTCGAAGGTGCCGCCACCGAGATCGAAC | |
| 28 danRer1.chr11_rev/0-120 AACACGCCGTTATCGATGGTCAGCAGAGACACGTCAAAGGTGCCACCACCCAGATCGAAC | |
| 29 | |
| 30 | |
| 31 hg17.chr1_rev/0-120 ACCAGGATGTTCTTCTCCCCCTCCCTCTTATCCAGGCCATAAGCAATAGCAGCTGCTGTA | |
| 32 canFam1.chr9_rev/0-120 ACCAGGATATTCTTCTCCCCTTCCCTCTTATCCAAGCCGTAAGCAATAGCAGCTGCTGTA | |
| 33 mm5.chr2_rev/0-120 ACAAGGATGTTCTTCTCTCCCTCTCTCTTATCCAGGCCATATGCAATAGCAGCTGCTGTA | |
| 34 galGal2.chr17_rev/0-120 ACAAGGATGTTCTTTTCACCCTCTCTCTTGTCCAATCCGTATGCAATTGCAGCAGCAGTT | |
| 35 fr1.chrUn_rev/0-120 ACGAGGATGTTCTTCTCGCCGTCCTTTTTGTCCAGACCATAAGCAATGGCAGCAGCGGTT | |
| 36 danRer1.chr11_rev/0-120 ACCAGGATGTTTTTCTCTCCGTCCCTCTTGTCCAGACCGTATGCAATGGCAGCCGCCGTA | |
| 37 | |
| 38 | |
| 39 CLUSTAL W(1.81) multiple sequence alignment | |
| 40 | |
| 41 | |
| 42 hg17.chr1/120-240 CAAAGTTGTGGCCACTAATGGAGATACTTATCTGGGTGGAGAAGACTTTGACCAGCGTGT | |
| 43 panTro1.chr1/120-240 CAAAGTTGTGGTCACTAATGGAGATACTCATCTGGGTGGAAAAGACTTTGACCAGCATGT | |
| 44 rn3.chr3/120-240 TGAAGTGGTGGCCACTAATGGAGACACTCATCTGGGTGGGGAAGACTTTGATCAGCGGGT | |
| 45 galGal2.chr17/120-240 TGAAGTTGTGGCTACAAATGGTGACACACACCTGGGTGGAGAAGACTTTGACCAGCGTGT | |
| 46 fr1.chrUn/120-240 TGAAGTGGTGGCCACCAATGGTGACACTCACCTTGGAGGTGAAGACTTTGATCAGCGCGT | |
| 47 danRer1.chr11/120-240 TGAAGTGGTGGCCACAAACGGAGACACTCACCTGGGCGGAGAAGACTTCGACCAGCGCGT | |
| 48 | |
| 49 | |
| 50 hg17.chr1/120-240 CATGGAACACTTCATCAAACTGTACAAAAAGAAGACTGGCAAAGATGTCAGGAAAGACAA | |
| 51 panTro1.chr1/120-240 CATGGAACACTTCATCAAACTGTACAAAAAGAAGACTGGCAAAGATGTCGGGAAAGACAA | |
| 52 rn3.chr3/120-240 CATGGAGCACTTCATCAAGCTGTACAAAAAGAAGACTGGGAAAGATGTCAGAAAGGACAA | |
| 53 galGal2.chr17/120-240 TATGGAGCACTTCATCAAACTCTACAAGAAGAAAACAGGAAAAGATGTCAGGAAGGATAA | |
| 54 fr1.chrUn/120-240 CATGGAACACTTCATCAAGCTATACAAGAAGAAGACTGGCAAAGACGTGCGCAAAGACAA | |
| 55 danRer1.chr11/120-240 CATGGAGCACTTCATCAAGCTGTACAAGAAGAAGACGGGCAAAGATGTGCGCAAAGACAA | |
| 56 | |
| 57 | |
| 58 CLUSTAL W(1.81) multiple sequence alignment | |
| 59 | |
| 60 | |
| 61 hg17.chr1_rev/120-240 TTGTCTTTCCTGACATCTTTGCCAGTCTTCTTTTTGTACAGTTTGATGAAGTGTTCCATG | |
| 62 panTro1.chr1_rev/120-240 TTGTCTTTCCCGACATCTTTGCCAGTCTTCTTTTTGTACAGTTTGATGAAGTGTTCCATG | |
| 63 rn3.chr3_rev/120-240 TTGTCCTTTCTGACATCTTTCCCAGTCTTCTTTTTGTACAGCTTGATGAAGTGCTCCATG | |
| 64 galGal2.chr17_rev/120-240 TTATCCTTCCTGACATCTTTTCCTGTTTTCTTCTTGTAGAGTTTGATGAAGTGCTCCATA | |
| 65 fr1.chrUn_rev/120-240 TTGTCTTTGCGCACGTCTTTGCCAGTCTTCTTCTTGTATAGCTTGATGAAGTGTTCCATG | |
| 66 danRer1.chr11_rev/120-240 TTGTCTTTGCGCACATCTTTGCCCGTCTTCTTCTTGTACAGCTTGATGAAGTGCTCCATG | |
| 67 | |
| 68 | |
| 69 hg17.chr1_rev/120-240 ACACGCTGGTCAAAGTCTTCTCCACCCAGATAAGTATCTCCATTAGTGGCCACAACTTTG | |
| 70 panTro1.chr1_rev/120-240 ACATGCTGGTCAAAGTCTTTTCCACCCAGATGAGTATCTCCATTAGTGACCACAACTTTG | |
| 71 rn3.chr3_rev/120-240 ACCCGCTGATCAAAGTCTTCCCCACCCAGATGAGTGTCTCCATTAGTGGCCACCACTTCA | |
| 72 galGal2.chr17_rev/120-240 ACACGCTGGTCAAAGTCTTCTCCACCCAGGTGTGTGTCACCATTTGTAGCCACAACTTCA | |
| 73 fr1.chrUn_rev/120-240 ACGCGCTGATCAAAGTCTTCACCTCCAAGGTGAGTGTCACCATTGGTGGCCACCACTTCA | |
| 74 danRer1.chr11_rev/120-240 ACGCGCTGGTCGAAGTCTTCTCCGCCCAGGTGAGTGTCTCCGTTTGTGGCCACCACTTCA | |
| 75 | |
| 76 | |
| 77 CLUSTAL W(1.81) multiple sequence alignment | |
| 78 | |
| 79 | |
| 80 hg17.chr1/240-360 TAGAGCTGTGCAGAAACTCTGGCGCAAGGTAGAAAAGGCCAAACGGGCCCTGTCTTCTCA | |
| 81 mm5.chr2/240-360 CAGAGCTGTGCAGAAACTCCGGCGTGAGGTAGAAAAGGCTAAGAGAGCCTTGTCTTCTCA | |
| 82 rn3.chr3/240-360 CAGAGCTGTGCAGAAACTCCGGCGTGAGGTAGAAAAGGCCAAGAGAGCCCTGTCTTCTCA | |
| 83 galGal2.chr17/240-360 CAGAGCTGTACAGAAACTAAGACGGGAAGTAGAGAAAGCGAAGCGGGCCCTGTCATCCCA | |
| 84 fr1.chrUn/240-360 CCGTGCTGTCCAGAAGCTGCGTCGTGAGGTTGAGAAGGCAAAGAGGGCCCTGTCTGCCCA | |
| 85 danRer1.chr11/240-360 CCGCGCCGTGCAGAAGCTGCGCAGAGAGGTGGAGAAGGCTAAGAGAGCCCTGTCTGCCCA | |
| 86 | |
| 87 | |
| 88 hg17.chr1/240-360 ACATCAAGCAAGCAGTAATTGAAATTGAGTCCTTCTATGAAGGAGAAGACTTTTCTGAGA | |
| 89 mm5.chr2/240-360 GCATCAAGCAAG----GATTGAAATTGAGTCCTTCTTCGAAGGAGAAGACTTCTCAGAGA | |
| 90 rn3.chr3/240-360 GCATCAAGCGAG----GATTGAAATTGAGTCCTTCTTCGAAGGAGAAGACTTCTCAGAGA | |
| 91 galGal2.chr17/240-360 GCACCAAGCTAG----AATTGAAATAGAATCCTTTTTTGAAGGAGAGGATTTCTCTGAGA | |
| 92 fr1.chrUn/240-360 GCACCAGGCCCG----CATTGAGATCGAGTCTTTCTTTGAGGGAGAAGATTTCTCCGAGA | |
| 93 danRer1.chr11/240-360 GCATCAGGCCCG----CATCGAGATCGAGTCCTTCTTTGAGGGAGAAGATTTCTCTGAGA | |
| 94 | |
| 95 | |
| 96 CLUSTAL W(1.81) multiple sequence alignment | |
| 97 | |
| 98 | |
| 99 hg17.chr1_rev/240-360 TCTCAGAAAAGTCTTCTCCTTCATAGAAGGACTCAATTTCAATTACTGCTTGCTTGATGT | |
| 100 mm5.chr2_rev/240-360 TCTCTGAGAAGTCTTCTCCTTCGAAGAAGGACTCAATTTCAATC----CTTGCTTGATGC | |
| 101 rn3.chr3_rev/240-360 TCTCTGAGAAGTCTTCTCCTTCGAAGAAGGACTCAATTTCAATC----CTCGCTTGATGC | |
| 102 galGal2.chr17_rev/240-360 TCTCAGAGAAATCCTCTCCTTCAAAAAAGGATTCTATTTCAATT----CTAGCTTGGTGC | |
| 103 fr1.chrUn_rev/240-360 TCTCGGAGAAATCTTCTCCCTCAAAGAAAGACTCGATCTCAATG----CGGGCCTGGTGC | |
| 104 danRer1.chr11_rev/240-360 TCTCAGAGAAATCTTCTCCCTCAAAGAAGGACTCGATCTCGATG----CGGGCCTGATGC | |
| 105 | |
| 106 | |
| 107 hg17.chr1_rev/240-360 TGAGAAGACAGGGCCCGTTTGGCCTTTTCTACCTTGCGCCAGAGTTTCTGCACAGCTCTA | |
| 108 mm5.chr2_rev/240-360 TGAGAAGACAAGGCTCTCTTAGCCTTTTCTACCTCACGCCGGAGTTTCTGCACAGCTCTG | |
| 109 rn3.chr3_rev/240-360 TGAGAAGACAGGGCTCTCTTGGCCTTTTCTACCTCACGCCGGAGTTTCTGCACAGCTCTG | |
| 110 galGal2.chr17_rev/240-360 TGGGATGACAGGGCCCGCTTCGCTTTCTCTACTTCCCGTCTTAGTTTCTGTACAGCTCTG | |
| 111 fr1.chrUn_rev/240-360 TGGGCAGACAGGGCCCTCTTTGCCTTCTCAACCTCACGACGCAGCTTCTGGACAGCACGG | |
| 112 danRer1.chr11_rev/240-360 TGGGCAGACAGGGCTCTCTTAGCCTTCTCCACCTCTCTGCGCAGCTTCTGCACGGCGCGG | |
| 113 | |
| 114 | |
| 115 CLUSTAL W(1.81) multiple sequence alignment | |
| 116 | |
| 117 | |
| 118 hg17.chr1/271-391 GAAAAGGCCAAACGGGCCCTGTCTTCTCAACATCAAGCAAGCAGTAATTGAAATTGAGTC | |
| 119 mm5.chr2/271-391 GAAAAGGCTAAGAGAGCCTTGTCTTCTCAGCATCAAGCAAG----GATTGAAATTGAGTC | |
| 120 rn3.chr3/271-391 GAAAAGGCCAAGAGAGCCCTGTCTTCTCAGCATCAAGCGAG----GATTGAAATTGAGTC | |
| 121 galGal2.chr17/271-391 GAGAAAGCGAAGCGGGCCCTGTCATCCCAGCACCAAGCTAG----AATTGAAATAGAATC | |
| 122 fr1.chrUn/271-391 GAGAAGGCAAAGAGGGCCCTGTCTGCCCAGCACCAGGCCCG----CATTGAGATCGAGTC | |
| 123 danRer1.chr11/271-391 GAGAAGGCTAAGAGAGCCCTGTCTGCCCAGCATCAGGCCCG----CATCGAGATCGAGTC | |
| 124 | |
| 125 | |
| 126 hg17.chr1/271-391 CTTCTATGAAGGAGAAGACTTTTCTGAGACCCTGACTCAGGCCAAATTTGAAGAGCTCAA | |
| 127 mm5.chr2/271-391 CTTCTTCGAAGGAGAAGACTTCTCAGAGACCCTTACTCGGGCCAAATTTGAAGAGCTGAA | |
| 128 rn3.chr3/271-391 CTTCTTCGAAGGAGAAGACTTCTCAGAGACCCTTACTCGGGCCAAATTTGAAGAGCTGAA | |
| 129 galGal2.chr17/271-391 CTTTTTTGAAGGAGAGGATTTCTCTGAGACGCTTACTCGTGCCAAATTTGAAGAACTGAA | |
| 130 fr1.chrUn/271-391 TTTCTTTGAGGGAGAAGATTTCTCCGAGACACTGACCCGTGCCAAATTTGAAGAGCTTAA | |
| 131 danRer1.chr11/271-391 CTTCTTTGAGGGAGAAGATTTCTCTGAGACTCTCACCAGAGCCAAGTTTGAAGAGCTCAA | |
| 132 | |
| 133 | |
| 134 CLUSTAL W(1.81) multiple sequence alignment | |
| 135 | |
| 136 | |
| 137 hg17.chr1_rev/271-391 TTGAGCTCTTCAAATTTGGCCTGAGTCAGGGTCTCAGAAAAGTCTTCTCCTTCATAGAAG | |
| 138 mm5.chr2_rev/271-391 TTCAGCTCTTCAAATTTGGCCCGAGTAAGGGTCTCTGAGAAGTCTTCTCCTTCGAAGAAG | |
| 139 rn3.chr3_rev/271-391 TTCAGCTCTTCAAATTTGGCCCGAGTAAGGGTCTCTGAGAAGTCTTCTCCTTCGAAGAAG | |
| 140 galGal2.chr17_rev/271-391 TTCAGTTCTTCAAATTTGGCACGAGTAAGCGTCTCAGAGAAATCCTCTCCTTCAAAAAAG | |
| 141 fr1.chrUn_rev/271-391 TTAAGCTCTTCAAATTTGGCACGGGTCAGTGTCTCGGAGAAATCTTCTCCCTCAAAGAAA | |
| 142 danRer1.chr11_rev/271-391 TTGAGCTCTTCAAACTTGGCTCTGGTGAGAGTCTCAGAGAAATCTTCTCCCTCAAAGAAG | |
| 143 | |
| 144 | |
| 145 hg17.chr1_rev/271-391 GACTCAATTTCAATTACTGCTTGCTTGATGTTGAGAAGACAGGGCCCGTTTGGCCTTTTC | |
| 146 mm5.chr2_rev/271-391 GACTCAATTTCAATC----CTTGCTTGATGCTGAGAAGACAAGGCTCTCTTAGCCTTTTC | |
| 147 rn3.chr3_rev/271-391 GACTCAATTTCAATC----CTCGCTTGATGCTGAGAAGACAGGGCTCTCTTGGCCTTTTC | |
| 148 galGal2.chr17_rev/271-391 GATTCTATTTCAATT----CTAGCTTGGTGCTGGGATGACAGGGCCCGCTTCGCTTTCTC | |
| 149 fr1.chrUn_rev/271-391 GACTCGATCTCAATG----CGGGCCTGGTGCTGGGCAGACAGGGCCCTCTTTGCCTTCTC | |
| 150 danRer1.chr11_rev/271-391 GACTCGATCTCGATG----CGGGCCTGATGCTGGGCAGACAGGGCTCTCTTAGCCTTCTC | |
| 151 | |
| 152 |