Mercurial > repos > bgruening > sailfish
diff test-data/sailfish_bias_result1.tab @ 5:1b4ed566a41c draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sailfish commit 03edb751808fef8bce744ebcbad5661a32373211
author | bgruening |
---|---|
date | Wed, 02 Nov 2016 10:30:36 -0400 |
parents | 3b4ed0e473dc |
children |
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--- a/test-data/sailfish_bias_result1.tab Sun Sep 18 06:05:57 2016 -0400 +++ b/test-data/sailfish_bias_result1.tab Wed Nov 02 10:30:36 2016 -0400 @@ -1,32 +1,16 @@ -# sailfish (quasi-mapping-based) v0.7.6 -# [ program ] => sailfish -# [ command ] => quant -# [ index ] => { ./index_dir } -# [ mates1 ] => { ./mate1.fastq } -# [ mates2 ] => { ./mate2.fastq } -# [ libType ] => { IU } -# [ output ] => { ./ } -# [ biasCorrect ] => { } -# [ threads ] => { 1 } -# [ fldMean ] => { 200 } -# [ fldSD ] => { 80 } -# [ maxReadOcc ] => { 200 } -# [ maxFragLen ] => { 1000 } -# [ txpAggregationKey ] => { gene_id } -# [ mapping rate ] => { 100% } -# Name Length TPM NumReads -NM_022658 2288 378838 4881 -NM_174914 2385 111257 1500.04 -NM_017410 2396 3099.5 42 -NM_018953 1612 26168.3 228 -NM_001168316 2283 12398.5 159.361 -NM_004503 1681 36198.8 330.806 -NR_003084 1640 0 0 -NM_173860 849 240218 962 -NM_006897 1541 80244.3 664 -NM_153693 2072 6430.57 74.2815 -NR_031764 1853 10254.5 104.595 -NM_014620 2300 45132.7 584.838 -NM_153633 1666 40578.4 367.074 -NM_014212 2037 4852.08 55 -NM_017409 1959 4330.19 47 +Name Length EffectiveLength TPM NumReads +NM_001168316 2283 1528.95 12702.4 158.926 +NM_174914 2385 1599.63 114719 1501.66 +NR_031764 1853 1214.33 10407.1 103.415 +NM_004503 1681 1085.83 37300.1 331.428 +NM_006897 1541 984.724 82401.9 664 +NM_014212 2037 1316.12 5106.81 55 +NM_014620 2300 1541.27 46908.6 591.628 +NM_017409 1959 1273.24 4510.99 47 +NM_017410 2396 1562.29 3285.28 42 +NM_018953 1612 1019.15 27338 227.994 +NM_022658 2288 1634.87 364846 4881 +NM_153633 1666 1082.85 40694.7 360.597 +NM_153693 2072 1374.67 6520.1 73.3448 +NM_173860 849 483.271 243258 962 +NR_003084 1640 1052.77 1.09566 0.00943897