Mercurial > repos > bgruening > sailfish

view tool-data/sailfish_indexes.loc.sample @ 3:85d0d479f05b draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sailfish commit af1a2810e59d86e039983060d998625a5410bb61
author bgruening
date Mon, 21 Dec 2015 18:18:03 -0500
parents 3b4ed0e473dc
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# This is a sample file distributed with Galaxy that is used to define a
# list of sailfish indices, using three columns tab separated:
#
# sailfish_index_id{tab}Sailfish Index desciption{tab}/data/sailfish_indexes/sailfish_index_id/
#
# An index can be created with the following command:
#
# sailfish index
#     --transcripts your_transcripts.fasta
#     --kmerSize 21
#     --out /data/sailfish_indexes/sailfish_index_id/
#     --threads 4
#