Mercurial > repos > bgruening > salmon

annotate tool-data/salmon_indexes.loc.sample @ 2:1b22d8a18acc draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 359ddec398e18d3e2a534239b1202691595d1243
author bgruening
date Thu, 13 Apr 2017 08:18:26 -0400
parents 91f3a2147127
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
1 # This is a sample file distributed with Galaxy that is used to define a
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
2 # list of salmon indices, using three columns tab separated:
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
3 #
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
4 # salmon_index_id{tab}Salmon Index desciption{tab}/data/salmon_indexes/salmon_index_id/
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
5 #
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
6 # An index can be created with the following command:
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
7 #
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
8 # salmon index
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
9 # --transcripts your_transcripts.fasta
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
10 # --kmerSize 21
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
11 # --out /data/salmon_indexes/salmon_index_id/
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
12 # --threads 4
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
13 #
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
14