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annotate tool-data/salmon_indexes.loc.sample @ 8:6b0ba6de1424 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 36a1b1d98fc042a232b227f3b012e24739922b56
author bgruening
date Thu, 23 Aug 2018 15:58:26 -0400
parents 91f3a2147127
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91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
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1 # This is a sample file distributed with Galaxy that is used to define a
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
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2 # list of salmon indices, using three columns tab separated:
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
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3 #
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
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4 # salmon_index_id{tab}Salmon Index desciption{tab}/data/salmon_indexes/salmon_index_id/
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
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5 #
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
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6 # An index can be created with the following command:
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
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7 #
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
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8 # salmon index
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
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9 # --transcripts your_transcripts.fasta
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
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10 # --kmerSize 21
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
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11 # --out /data/salmon_indexes/salmon_index_id/
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
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12 # --threads 4
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
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13 #
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
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