comparison salmon.xml @ 3:5a60f347f566 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 1b7f0370c3a5a8fd4ba2736607ad938a82a98b7b

2:1b22d8a18acc

<tool id="salmon" name="Salmon" version="0.7.2">

    <description>Transcript Quantification from RNA-seq data</description>

    <macros>
        <xml name="strandedness">

                <option value="U" selected="True">Not stranded (U)</option>
                <option value="SF">read 1 (or single-end read) comes from the forward strand (SF)</option>
                <option value="SR">read 1 (or single-end read) comes from the reverse strand (SR)</option>
            </param>
        </xml>
    </macros>

    <requirements>
        <requirement type="package" version="1.0.6">bzip2</requirement>
        <requirement type="package" version="0.7.2">salmon</requirement>
    </requirements>

    <stdio>
        <exit_code range="1:" />
        <exit_code range=":-1" />

3:5a60f347f566

<tool id="salmon" name="Salmon" version="@VERSION@">

    <description>Transcript Quantification from RNA-seq data</description>

    <macros>
        <xml name="strandedness">

                <option value="U" selected="True">Not stranded (U)</option>
                <option value="SF">read 1 (or single-end read) comes from the forward strand (SF)</option>
                <option value="SR">read 1 (or single-end read) comes from the reverse strand (SR)</option>
            </param>
        </xml>
        <token name="@VERSION@">0.8.2</token>
    </macros>

    <requirements>
        <requirement type="package" version="1.0.6">bzip2</requirement>
        <requirement type="package" version="@VERSION@">salmon</requirement>
    </requirements>

    <stdio>
        <exit_code range="1:" />
        <exit_code range=":-1" />