comparison salmon.xml @ 7:e7e885f718fb draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit bae8cc7d7a88154b815acc3cd126010e7e965d5c

6:885d11dc8090

So, for example, if you wanted to specify a fragment library of strand-specific
paired-end reads, oriented toward each other, where read 1 comes from the
forward strand and read 2 comes from the reverse strand, you would specify ``-l
ISF`` on the command line.  This designates that the library being processed has
the type "ISF" meaning, **I**\ nward (the relative orientation), **S**\ tranted
(the protocol is strand-specific), **F**\ orward (read 1 comes from the forward
strand).
The single end library strings are a bit simpler than their pair-end counter
parts, since there is no relative orientation of which to speak.  Thus, the
only possible library format types for single-end reads are ``U`` (for

7:e7e885f718fb

So, for example, if you wanted to specify a fragment library of strand-specific
paired-end reads, oriented toward each other, where read 1 comes from the
forward strand and read 2 comes from the reverse strand, you would specify ``-l
ISF`` on the command line.  This designates that the library being processed has
the type "ISF" meaning, **I**\ nward (the relative orientation), **S**\ tranded
(the protocol is strand-specific), **F**\ orward (read 1 comes from the forward
strand).
The single end library strings are a bit simpler than their pair-end counter
parts, since there is no relative orientation of which to speak.  Thus, the
only possible library format types for single-end reads are ``U`` (for