Mercurial > repos > bgruening > salmon
diff salmon.xml @ 4:570e7e9c19a5 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7fae9d149b8b6aab2d01d94f137efc2967c7ee7
| author | bgruening |
|---|---|
| date | Fri, 30 Jun 2017 05:45:09 -0400 |
| parents | 5a60f347f566 |
| children | 53e9709776a0 |
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--- a/salmon.xml Fri May 19 12:23:53 2017 -0400 +++ b/salmon.xml Fri Jun 30 05:45:09 2017 -0400 @@ -234,7 +234,8 @@ label="Perform fragment GC bias correction" help=""/> <param argument="--geneMap" type="data" format="tabular,gff,gtf" optional="True" - label="File containing a mapping of transcripts to genes. If this file is provided Salmon will output both quant.sf and quant.genes.sf files, where the latter contains aggregated gene-level abundance estimates. The transcript to gene mapping should be provided as either a GTF file, or a in a simple tab-delimited format where each line contains the name of a transcript and the gene to which it belongs separated by a tab." /> + label="File containing a mapping of transcripts to genes" + help="If this file is provided Salmon will output both quant.sf and quant.genes.sf files, where the latter contains aggregated gene-level abundance estimates. The transcript to gene mapping should be provided as either a GTF file, or a in a simple tab-delimited format where each line contains the name of a transcript and the gene to which it belongs separated by a tab." /> <section name="adv" title="Additional Options"> <param argument="--writeMappings" type="boolean" truevalue="--writeMappings" falsevalue="" checked="False" label="Write Mappings"