Mercurial > repos > bgruening > salmon
diff macros.xml @ 13:e3d32471da11 draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 30fe16f7d786e4b0c43b8333853fc56c59f6c664"
author | bgruening |
---|---|
date | Sat, 25 Apr 2020 11:49:15 -0400 |
parents | 7fdb9d1591e2 |
children | b265be7af3db |
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--- a/macros.xml Tue Oct 15 12:01:08 2019 -0400 +++ b/macros.xml Sat Apr 25 11:49:15 2020 -0400 @@ -4,12 +4,10 @@ <token name="@IDX_VERSION@">q6</token> <xml name="requirements"> <requirements> - <requirement type="package" version="1.0.6">bzip2</requirement> - <requirement type="package" version="1.2">seqtk</requirement> + <requirement type="package" version="1.3">seqtk</requirement> <requirement type="package" version="0.14.1">salmon</requirement> - <requirement type="package" version="1.9">samtools</requirement> + <requirement type="package" version="1.10">samtools</requirement> <requirement type="package" version="0.2.0">vpolo</requirement> - <requirement type="package" version="1.17.2">numpy</requirement> <requirement type="package" version="0.25.1">pandas</requirement> <requirement type="package" version="1.3.1">scipy</requirement> </requirements> @@ -286,6 +284,7 @@ <citation type="doi">10.1038/nmeth.4197</citation> </citations> </xml> + <token name="@bam_sort@"><![CDATA[samtools sort -@ \${GALAXY_SLOTS} --output-fmt=BAM -o ./output/bamout.bam]]></token> <token name="@indexing@"><![CDATA[ mkdir ./index && mkdir ./output &&