view umiout.sh @ 12:7fdb9d1591e2 draft

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit c17bc974bf9bbaa1fc1e47ea72162fd244f0e612"
author bgruening
date Tue, 15 Oct 2019 12:01:08 -0400
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#!/usr/bin/bash

mkdir fixed;
for file in ./umiout/*;
do prefix="${file%.dot.gz}";
prefix=${prefix/.\/umiout\//};
gunzip $file;
sed "s/umiout\/$prefix.dot.gz/$prefix/" umiout/$prefix.dot > fixed/$prefix.dot;
dot -Tpdf fixed/$prefix.dot -o fixed/$prefix.pdf;
done
ls fixed