diff macros.xml @ 4:85b3dc9b6830 draft

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 4c71464b5f5047e0745067c115c37a5d06867649"

--- a/macros.xml	Sat Apr 25 11:52:56 2020 -0400
+++ b/macros.xml	Mon Jul 13 17:14:25 2020 -0400
@@ -1,15 +1,15 @@
 <macros>
-    <token name="@VERSION@">0.14.1.2</token>
+    <token name="@VERSION@">1.3.0</token>
     <token name="@GALAXY_VERSION@">galaxy0</token>
-    <token name="@IDX_VERSION@">q6</token>
+    <token name="@IDX_VERSION@">q7</token>
     <xml name="requirements">
         <requirements>
+            <requirement type="package" version="@VERSION@">salmon</requirement>
             <requirement type="package" version="1.3">seqtk</requirement>
-            <requirement type="package" version="0.14.1">salmon</requirement>
             <requirement type="package" version="1.10">samtools</requirement>
             <requirement type="package" version="0.2.0">vpolo</requirement>
-            <requirement type="package" version="0.25.1">pandas</requirement>
-            <requirement type="package" version="1.3.1">scipy</requirement>
+            <requirement type="package" version="1.0.3">pandas</requirement>
+            <requirement type="package" version="1.4.1">scipy</requirement>
         </requirements>
     </xml>
     <xml name="stranded">
@@ -358,7 +358,7 @@
         #end if
 
         salmon quant
-            --index $index_path
+            --index '$index_path'
             #if $quant_type.input.single_or_paired.single_or_paired_opts == 'single':
                 --libType ${quant_type.input.single_or_paired.strandedness}
                 #if $compressed == 'GZ':