view umiout.sh @ 12:71ce24befa24 draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 3b330b885fde7c730c5d121f6b37e1d99d3721e1

#!/usr/bin/bash

set -e

mkdir -p fixed;
for file in ./umiout/*;
do
prefix="${file%.dot.gz}";
prefix="${prefix/.\/umiout\//}";
gunzip "$file";
sed "s/umiout\/$prefix.dot.gz/$prefix/" "umiout/$prefix.dot" > "fixed/$prefix.dot";
dot -Tpdf "fixed/$prefix.dot" -o "fixed/$prefix.pdf";
done
ls fixed