Mercurial > repos > bgruening > salmonquantmerge
view salmonquantmerge.xml @ 6:88c07fc4024c draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 26e9f1627e91a4be6bdc7e71cd44f1ea1701ee6f"
author | bgruening |
---|---|
date | Thu, 22 Jul 2021 14:06:29 +0000 |
parents | 43658f594542 |
children | 7e50e8d920db |
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<tool id="salmonquantmerge" name="Salmon quantmerge" version="@VERSION@+@GALAXY_VERSION@" profile="@PROFILE_VERSION@"> <description>Merge multiple quantification results into a single file</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements"/> <command detect_errors="exit_code"><![CDATA[ @qmerge@ ]]></command> <inputs> <expand macro="quantmerge"/> </inputs> <outputs> <data name="mergedfile" format="tabular" label="${tool.name} on ${on_string}" from_work_dir="qmergeout.tab"/> </outputs> <tests> <test expect_num_outputs="1"> <repeat name="quantfiles"> <param name="quants" value="quant2.sf"/> <param name="names" value="asdf"/> </repeat> <repeat name="quantfiles"> <param name="quants" value="quant1.sf"/> <param name="names" value="qwerty"/> </repeat> <output name="mergedfile" ftype="tabular"> <assert_contents> <has_text text="qwerty"/> <has_text text="NM_014621"/> <has_n_columns n="3"/> </assert_contents> </output> </test> </tests> <help><![CDATA[ @salmonhelp@ ]]></help> <expand macro="citations"/> </tool>