Mercurial > repos > bgruening > salmonquantmerge
view umiout.sh @ 6:88c07fc4024c draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 26e9f1627e91a4be6bdc7e71cd44f1ea1701ee6f"
author | bgruening |
---|---|
date | Thu, 22 Jul 2021 14:06:29 +0000 |
parents | 178ebdfe5a7e |
children |
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#!/usr/bin/bash mkdir fixed; for file in ./umiout/*; do prefix="${file%.dot.gz}"; prefix=${prefix/.\/umiout\//}; gunzip $file; sed "s/umiout\/$prefix.dot.gz/$prefix/" umiout/$prefix.dot > fixed/$prefix.dot; dot -Tpdf fixed/$prefix.dot -o fixed/$prefix.pdf; done ls fixed