Mercurial > repos > bgruening > sambamba_flagstat
changeset 1:cfd6e76541ff draft default tip
planemo upload for repository https://github.com/biod/sambamba commit 99bb4ed496a9cce79ab0a7e613230cf63a44d9f9
| author | bgruening |
|---|---|
| date | Mon, 10 Feb 2025 19:12:51 +0000 |
| parents | ce3927af5a8f |
| children | |
| files | macros.xml test-data/2.markdup.bam test-data/2.markdup.txt test-data/2.markdup_removed.bam |
| diffstat | 4 files changed, 14 insertions(+), 1 deletions(-) [+] |
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--- a/macros.xml Wed Jun 12 15:00:52 2024 +0000 +++ b/macros.xml Mon Feb 10 19:12:51 2025 +0000 @@ -1,6 +1,6 @@ <macros> <token name="@TOOL_VERSION@">1.0.1</token> - <token name="@SUFFIX_VERSION@">1</token> + <token name="@SUFFIX_VERSION@">2</token> <xml name="requirements"> <requirements> <requirement type="package" version="1.0.1">sambamba</requirement>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/2.markdup.txt Mon Feb 10 19:12:51 2025 +0000 @@ -0,0 +1,13 @@ + +sambamba 1.0.1 + by Artem Tarasov and Pjotr Prins (C) 2012-2023 + LDC 1.39.0 / DMD v2.109.1 / LLVM17.0.6 / bootstrap LDC - the LLVM D compiler (1.39.0) + +finding positions of the duplicate reads in the file... + sorted 0 end pairs + and 4 single ends (among them 0 unmatched pairs) + collecting indices of duplicate reads... done in 0 ms + found 3 duplicates +collected list of positions in 0 min 0 sec +marking duplicates... +collected list of positions in 0 min 0 sec