# HG changeset patch
# User bgruening
# Date 1739214747 0
# Node ID 66a7ee77d7e3d29b83d4887efe025afe31322a59
# Parent  480c9d4c8957d41d324e49ec1de0d51f6d177ada
planemo upload for repository https://github.com/biod/sambamba commit 99bb4ed496a9cce79ab0a7e613230cf63a44d9f9

diff -r 480c9d4c8957 -r 66a7ee77d7e3 macros.xml
--- a/macros.xml	Wed Jun 12 15:01:11 2024 +0000
+++ b/macros.xml	Mon Feb 10 19:12:27 2025 +0000
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">1.0.1</token>
-    <token name="@SUFFIX_VERSION@">1</token>
+    <token name="@SUFFIX_VERSION@">2</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="1.0.1">sambamba</requirement>
diff -r 480c9d4c8957 -r 66a7ee77d7e3 test-data/2.markdup.bam
Binary file test-data/2.markdup.bam has changed
diff -r 480c9d4c8957 -r 66a7ee77d7e3 test-data/2.markdup.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/2.markdup.txt	Mon Feb 10 19:12:27 2025 +0000
@@ -0,0 +1,13 @@
+
+sambamba 1.0.1
+ by Artem Tarasov and Pjotr Prins (C) 2012-2023
+    LDC 1.39.0 / DMD v2.109.1 / LLVM17.0.6 / bootstrap LDC - the LLVM D compiler (1.39.0)
+
+finding positions of the duplicate reads in the file...
+  sorted 0 end pairs
+     and 4 single ends (among them 0 unmatched pairs)
+  collecting indices of duplicate reads...   done in 0 ms
+  found 3 duplicates
+collected list of positions in 0 min 0 sec
+marking duplicates...
+collected list of positions in 0 min 0 sec
diff -r 480c9d4c8957 -r 66a7ee77d7e3 test-data/2.markdup_removed.bam
Binary file test-data/2.markdup_removed.bam has changed