# HG changeset patch # User bgruening # Date 1739214747 0 # Node ID 66a7ee77d7e3d29b83d4887efe025afe31322a59 # Parent 480c9d4c8957d41d324e49ec1de0d51f6d177ada planemo upload for repository https://github.com/biod/sambamba commit 99bb4ed496a9cce79ab0a7e613230cf63a44d9f9 diff -r 480c9d4c8957 -r 66a7ee77d7e3 macros.xml --- a/macros.xml Wed Jun 12 15:01:11 2024 +0000 +++ b/macros.xml Mon Feb 10 19:12:27 2025 +0000 @@ -1,6 +1,6 @@ 1.0.1 - 1 + 2 sambamba diff -r 480c9d4c8957 -r 66a7ee77d7e3 test-data/2.markdup.bam Binary file test-data/2.markdup.bam has changed diff -r 480c9d4c8957 -r 66a7ee77d7e3 test-data/2.markdup.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/2.markdup.txt Mon Feb 10 19:12:27 2025 +0000 @@ -0,0 +1,13 @@ + +sambamba 1.0.1 + by Artem Tarasov and Pjotr Prins (C) 2012-2023 + LDC 1.39.0 / DMD v2.109.1 / LLVM17.0.6 / bootstrap LDC - the LLVM D compiler (1.39.0) + +finding positions of the duplicate reads in the file... + sorted 0 end pairs + and 4 single ends (among them 0 unmatched pairs) + collecting indices of duplicate reads... done in 0 ms + found 3 duplicates +collected list of positions in 0 min 0 sec +marking duplicates... +collected list of positions in 0 min 0 sec diff -r 480c9d4c8957 -r 66a7ee77d7e3 test-data/2.markdup_removed.bam Binary file test-data/2.markdup_removed.bam has changed