Mercurial > repos > bgruening > semibin_generate_cannot_links

diff test-data/taxonomy_2.tsv @ 0:dba4c0409de1 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/semibin commit aa9bfb2fb62547ee8bac34f0de5b3beaa0bfd1a4"
author bgruening
date Fri, 14 Oct 2022 21:32:03 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/taxonomy_2.tsv	Fri Oct 14 21:32:03 2022 +0000
@@ -0,0 +1,40 @@
+g1k_0	13548	genus	Treponema A	4	4	4	1.000	d_Bacteria;p_Spirochaetota;c_Spirochaetia;o_Treponematales;f_Treponemataceae;g_Treponema A
+g1k_1	566	species	Prevotella intermedia	11	9	6	0.520	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales;f_Bacteroidaceae;g_Prevotella;s_Prevotella intermedia
+g1k_2	566	species	Prevotella intermedia	15	15	10	0.980	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales;f_Bacteroidaceae;g_Prevotella;s_Prevotella intermedia
+g1k_3	206	order	Bacteroidales	5	5	5	1.000	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales
+g1k_4	566	species	Prevotella intermedia	21	19	11	0.640	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales;f_Bacteroidaceae;g_Prevotella;s_Prevotella intermedia
+g1k_5	206	order	Bacteroidales	18	16	12	0.730	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales
+g1k_6	206	order	Bacteroidales	22	22	14	0.670	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales
+g1k_7	566	species	Prevotella intermedia	8	8	5	0.540	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales;f_Bacteroidaceae;g_Prevotella;s_Prevotella intermedia
+g1k_8	209	species	Bacteroides fragilis	6	5	2	0.640	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales;f_Bacteroidaceae;g_Bacteroides;s_Bacteroides fragilis
+g1k_9	565	genus	Prevotella	27	25	21	0.870	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales;f_Bacteroidaceae;g_Prevotella
+g2k_0	13548	genus	Treponema A	3	3	3	1.000	d_Bacteria;p_Spirochaetota;c_Spirochaetia;o_Treponematales;f_Treponemataceae;g_Treponema A
+g2k_1	209	species	Bacteroides fragilis	9	9	4	0.930	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales;f_Bacteroidaceae;g_Bacteroides;s_Bacteroides fragilis
+g2k_2	565	genus	Prevotella	9	9	9	1.000	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales;f_Bacteroidaceae;g_Prevotella
+g2k_3	565	genus	Prevotella	8	8	7	0.840	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales;f_Bacteroidaceae;g_Prevotella
+g2k_4	209	species	Bacteroides fragilis	10	8	4	0.500	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales;f_Bacteroidaceae;g_Bacteroides;s_Bacteroides fragilis
+g2k_5	8420	species	Treponema D porcinum	2	1	1	1.000	d_Bacteria;p_Spirochaetota;c_Spirochaetia;o_Treponematales;f_Treponemataceae;g_Treponema D;s_Treponema D porcinum
+g2k_6	209	species	Bacteroides fragilis	58	52	32	0.730	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales;f_Bacteroidaceae;g_Bacteroides;s_Bacteroides fragilis
+g2k_7	1193	species	Bacteroides eggerthii	14	14	10	0.790	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales;f_Bacteroidaceae;g_Bacteroides;s_Bacteroides eggerthii
+g2k_8	566	species	Prevotella intermedia	33	32	19	0.600	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales;f_Bacteroidaceae;g_Prevotella;s_Prevotella intermedia
+g2k_9	566	species	Prevotella intermedia	15	15	7	0.600	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales;f_Bacteroidaceae;g_Prevotella;s_Prevotella intermedia
+g3k_0	22555	species	UBA1066 sp002316215	3	2	1	0.940	d_Bacteria;p_Firmicutes A;c_Clostridia;o_Lachnospirales;f_Lachnospiraceae;g_UBA1066;s_UBA1066 sp002316215
+g3k_1	11375	species	Treponema B denticola A	7	7	5	0.610	d_Bacteria;p_Spirochaetota;c_Spirochaetia;o_Treponematales;f_Treponemataceae;g_Treponema B;s_Treponema B denticola A
+g3k_2	208	genus	Bacteroides	22	19	13	0.790	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales;f_Bacteroidaceae;g_Bacteroides
+g3k_3	288	family	Treponemataceae	5	5	5	1.000	d_Bacteria;p_Spirochaetota;c_Spirochaetia;o_Treponematales;f_Treponemataceae
+g3k_4	208	genus	Bacteroides	11	11	7	0.740	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales;f_Bacteroidaceae;g_Bacteroides
+g3k_5	208	genus	Bacteroides	46	40	24	0.670	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales;f_Bacteroidaceae;g_Bacteroides
+g3k_6	2	superkingdom	Bacteria	7	7	6	1.000	d_Bacteria
+g3k_7	209	species	Bacteroides fragilis	2	2	1	0.500	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales;f_Bacteroidaceae;g_Bacteroides;s_Bacteroides fragilis
+g3k_8	566	species	Prevotella intermedia	14	14	10	0.750	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales;f_Bacteroidaceae;g_Prevotella;s_Prevotella intermedia
+g3k_9	565	genus	Prevotella	52	51	45	0.860	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales;f_Bacteroidaceae;g_Prevotella
+g4k_0	565	genus	Prevotella	10	9	5	0.820	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales;f_Bacteroidaceae;g_Prevotella
+g4k_1	565	genus	Prevotella	36	35	32	0.890	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales;f_Bacteroidaceae;g_Prevotella
+g4k_2	565	genus	Prevotella	34	33	31	0.920	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales;f_Bacteroidaceae;g_Prevotella
+g4k_3	209	species	Bacteroides fragilis	13	12	4	0.560	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales;f_Bacteroidaceae;g_Bacteroides;s_Bacteroides fragilis
+g4k_4	209	species	Bacteroides fragilis	4	4	3	0.990	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales;f_Bacteroidaceae;g_Bacteroides;s_Bacteroides fragilis
+g4k_5	208	genus	Bacteroides	24	20	18	0.940	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales;f_Bacteroidaceae;g_Bacteroides
+g4k_6	1193	species	Bacteroides eggerthii	3	3	3	1.000	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales;f_Bacteroidaceae;g_Bacteroides;s_Bacteroides eggerthii
+g4k_7	288	family	Treponemataceae	4	4	3	0.670	d_Bacteria;p_Spirochaetota;c_Spirochaetia;o_Treponematales;f_Treponemataceae
+g4k_8	565	genus	Prevotella	9	9	7	0.530	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales;f_Bacteroidaceae;g_Prevotella
+g4k_9	566	species	Prevotella intermedia	11	10	6	0.790	d_Bacteria;p_Bacteroidota;c_Bacteroidia;o_Bacteroidales;f_Bacteroidaceae;g_Prevotella;s_Prevotella intermedia