Mercurial > repos > bgruening > sklearn_clf_metrics
annotate keras_macros.xml @ 26:44f0ce9488fb draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
author | bgruening |
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date | Fri, 09 Aug 2019 07:22:24 -0400 |
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children | 5a21a631d2eb |
rev | line source |
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26
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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1 <macros> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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2 <token name="@KERAS_VERSION@">0.4.0</token> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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3 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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4 <xml name="macro_stdio"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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5 <stdio> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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6 <exit_code range="1:" level="fatal" description="Error occurred. Please check Tool Standard Error"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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7 </stdio> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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8 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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9 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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10 <xml name="keras_optimizer_common" token_lr="0.01"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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11 <section name="optimizer_options" title="Optimizer Advanced Options" expanded="false"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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12 <param argument="lr" type="float" value="@LR@" optional="true" label="Learning rate" help="float >= 0"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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13 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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14 <!--param argument="clipnorm" type="float" value="" optional="true" label="clipnorm" help="float >= 0"/--> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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15 <!--param argument="clipvalue" type="float" value="" optional="true" label="clipvalue" help="float >= 0"/--> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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16 </section> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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17 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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18 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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19 <xml name="keras_optimizer_common_more" token_lr="0.001"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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20 <expand macro="keras_optimizer_common" lr="@LR@"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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21 <param argument="epsilon" type="float" value="" label="epsilon" optional="true" help="Fuzz factor. If `None`, defaults to `K.epsilon()`"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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22 <param argument="decay" type="float" value="0" optional="true" label="decay" help="Learning rate decay over each update."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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23 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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24 </expand> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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25 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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26 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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27 <xml name="keras_activations"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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28 <param argument="activation" type="select" label="Activation function"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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29 <option value="linear" selected="true">None / linear (default)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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30 <option value="softmax">softmax</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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31 <option value="elu">elu</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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32 <option value="selu">selu</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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33 <option value="softplus">softplus</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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34 <option value="softsign">softsign</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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35 <option value="relu">relu</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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36 <option value="tanh">tanh</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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37 <option value="sigmoid">sigmoid</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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38 <option value="hard_sigmoid">hard_sigmoid</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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39 <option value="exponential">tanh</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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40 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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41 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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42 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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43 <xml name="keras_initializers" token_argument="kernel_initializer" token_default_kernel="false" token_default_bias="false" token_default_embeddings="false"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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44 <param argument="@ARGUMENT@" type="select" label="@ARGUMENT@"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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45 <option value="zeros" selected="@DEFAULT_BIAS@">zero / zeros / Zeros</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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46 <option value="ones">one / ones / Ones</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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47 <option value="constant">constant / Constant</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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48 <option value="random_normal">normal / random_normal / RandomNormal</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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49 <option value="random_uniform" selected="@DEFAULT_EMBEDDINGS@">uniform / random_uniform / RandomUniform</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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50 <option value="truncated_normal">truncated_normal / TruncatedNormal</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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51 <option value="orthogonal">orthogonal / Orthogonal</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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52 <option value="identity">identity / Identity</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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53 <option value="glorot_normal">glorot_normal</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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54 <option value="glorot_uniform" selected="@DEFAULT_KERNEL@">glorot_uniform</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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55 <option value="he_normal">he_normal</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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56 <option value="he_uniform">he_uniform</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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57 <option value="lecun_normal">lecun_normal</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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58 <option value="lecun_uniform">lecun_uniform</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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59 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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60 </xml> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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61 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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62 <xml name="keras_regularizers" token_argument="kernel_regularizer"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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63 <param argument="@ARGUMENT@" type="text" value="(0. , 0.)" optional="true" label="@ARGUMENT@" |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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64 help="(l1, l2). l1/l2: float; L1/l2 regularization factor. (0., 0.) is equivalent to `None`"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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65 </xml> |
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66 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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67 <xml name="keras_constraints_options"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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68 <section name="constraint_options" title="Constraint Advanced Options" expanded="false"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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69 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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70 <param argument="axis" type="text" value="0" help="Integer or list of integers. axis along which to calculate weight norms"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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71 <sanitizer> |
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72 <valid initial="default"> |
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73 <add value="["/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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74 <add value="]"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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75 </valid> |
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76 </sanitizer> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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77 </param> |
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78 </section> |
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79 </xml> |
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80 |
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81 <xml name="keras_constraints" token_argument="kernel_constraint"> |
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82 <conditional name="@ARGUMENT@"> |
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83 <param argument="constraint_type" type="select" label="@ARGUMENT@"> |
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84 <option value="None" selected="true">None (default)</option> |
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85 <option value="MaxNorm">maxnorm / max_norm / MaxNorm</option> |
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86 <option value="NonNeg">nonneg / non_neg / NonNeg</option> |
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87 <option value="UnitNorm">unitnorm / unit_norm / UnitNorm</option> |
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88 <option value="MinMaxNorm">min_max_norm / MinMaxNorm</option> |
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89 </param> |
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90 <when value="None"/> |
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91 <when value="MaxNorm"> |
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92 <expand macro="keras_constraints_options"> |
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93 <param argument="max_value" type="float" value="2" help="the maximum norm for the incoming weights."/> |
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94 </expand> |
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95 </when> |
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96 <when value="NonNeg"> |
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97 </when> |
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98 <when value="UnitNorm"> |
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99 <expand macro="keras_constraints_options"/> |
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100 </when> |
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101 <when value="MinMaxNorm"> |
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102 <expand macro="keras_constraints_options"> |
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103 <param argument="min_value" type="float" value="0." help="the minimum norm for the incoming weights."/> |
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104 <param argument="max_value" type="float" value="1." help="the maximum norm for the incoming weights."/> |
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105 <param argument="max_value" type="float" value="1." help="rate for enforcing the constraint."/> |
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106 </expand> |
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107 </when> |
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108 </conditional> |
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109 </xml> |
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110 |
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111 <xml name="keras_layer_types_core"> |
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112 <option value="Dense">Dense</option> |
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113 <option value="Activation">Activation</option> |
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114 <option value="Dropout">Dropout</option> |
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115 <option value="Flatten">Flatten</option> |
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116 <option value="Reshape">Reshape</option> |
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117 <option value="Permute">Permute</option> |
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118 <option value="RepeatVector">RepeatVector</option> |
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119 <!--option value="Lambda">Lambda - Not supported</option--> |
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120 <option value="ActivityRegularization">ActivityRegularization</option> |
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121 <option value="Masking">Masking</option> |
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122 <option value="SpatialDropout1D">SpatialDropout1D</option> |
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123 <option value="SpatialDropout2D">SpatialDropout2D</option> |
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124 <option value="SpatialDropout3D">SpatialDropout3D</option> |
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125 </xml> |
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126 |
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127 <xml name="keras_layer_types_Convolutional"> |
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128 <option value="Conv1D">Conv1D</option> |
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129 <option value="Conv2D">Conv2D</option> |
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130 <option value="SeparableConv1D">SeparableConv1D</option> |
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131 <option value="SeparableConv2D">SeparableConv2D</option> |
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132 <option value="DepthwiseConv2D">DepthwiseConv2D</option> |
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133 <option value="Conv2DTranspose">Conv2DTranspose</option> |
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134 <option value="Conv3D">Conv3D</option> |
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135 <option value="Conv3DTranspose">Conv3DTranspose</option> |
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136 <option value="Cropping1D">Cropping1D</option> |
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137 <option value="Cropping2D">Cropping2D</option> |
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138 <option value="Cropping3D">Cropping3D</option> |
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139 <option value="UpSampling1D">UpSampling1D</option> |
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140 <option value="UpSampling2D">UpSampling2D</option> |
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141 <option value="UpSampling3D">UpSampling3D</option> |
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142 <option value="ZeroPadding1D">ZeroPadding1D</option> |
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143 <option value="ZeroPadding2D">ZeroPadding2D</option> |
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144 <option value="ZeroPadding3D">ZeroPadding3D</option> |
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145 </xml> |
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146 |
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147 <xml name="keras_layer_types_Pooling"> |
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148 <option value="MaxPooling1D">MaxPooling1D</option> |
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149 <option value="MaxPooling2D">MaxPooling2D</option> |
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150 <option value="MaxPooling3D">MaxPooling3D</option> |
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151 <option value="AveragePooling1D">AveragePooling1D</option> |
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152 <option value="AveragePooling2D">AveragePooling2D</option> |
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153 <option value="AveragePooling3D">AveragePooling3D</option> |
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154 <option value="GlobalMaxPooling1D">GlobalMaxPooling1D</option> |
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155 <option value="GlobalAveragePooling1D">GlobalAveragePooling1D</option> |
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156 <option value="GlobalMaxPooling2D">GlobalMaxPooling2D</option> |
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157 <option value="GlobalAveragePooling2D">GlobalAveragePooling2D</option> |
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158 <option value="GlobalMaxPooling3D">GlobalMaxPooling3D</option> |
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159 <option value="GlobalAveragePooling3D">GlobalAveragePooling3D</option> |
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160 </xml> |
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161 |
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162 <xml name="keras_layer_types_locally_connected"> |
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163 <option value="LocallyConnected1D">LocallyConnected1D</option> |
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164 <option value="LocallyConnected2D">LocallyConnected2D</option> |
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165 </xml> |
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166 |
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167 <xml name="keras_layer_types_recurrent"> |
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168 <option value="RNN">RNN</option> |
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169 <option value="Masking">Masking</option> |
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170 <option value="SimpleRNN">SimpleRNN</option> |
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171 <option value="GRU">GRU</option> |
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172 <option value="LSTM">LSTM</option> |
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173 <option value="ConvLSTM2D">ConvLSTM2D</option> |
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174 <option value="ConvLSTM2DCell">ConvLSTM2DCell</option> |
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175 <option value="SimpleRNNCell">SimpleRNNCell</option> |
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176 <option value="GRUCell">GRUCell</option> |
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177 <option value="LSTMCell">LSTMCell</option> |
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178 <option value="CuDNNGRU">CuDNNGRU</option> |
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179 <option value="CuDNNLSTM">Dense</option> |
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180 </xml> |
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181 |
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182 <xml name="keras_layer_types_embedding"> |
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183 <option value="Embedding">Embedding</option> |
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184 </xml> |
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185 |
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186 <xml name="keras_layer_types_advanced_activations"> |
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187 <option value="LeakyReLU">LeakyReLU</option> |
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188 <option value="PReLU">PReLU</option> |
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189 <option value="ELU">ELU</option> |
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190 <option value="ThresholdedReLU">ThresholdedReLU</option> |
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191 <option value="Softmax">Softmax</option> |
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192 <option value="ReLU">ReLU</option> |
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193 </xml> |
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194 |
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195 <xml name="keras_layer_types_normalization"> |
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196 <option value="BatchNormalization">BatchNormalization</option> |
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197 </xml> |
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198 |
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199 <xml name="keras_layer_types_noise"> |
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200 <option value="GaussianNoise">GaussianNoise</option> |
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201 <option value="GaussianDropout">GaussianDropout</option> |
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202 <option value="AlphaDropout">AlphaDropout</option> |
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203 </xml> |
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204 |
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205 <xml name="keras_layer_types_merge"> |
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206 <option value="Add">Add</option> |
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207 <option value="Subtract">Subtract</option> |
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208 <option value="Multiply">Multiply</option> |
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209 <option value="Average">Average</option> |
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210 <option value="Maximum">Maximum</option> |
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211 <option value="Minimum">Minimum</option> |
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212 <option value="Concatenate">Concatenate</option> |
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213 <option value="Dot">Dot</option> |
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214 </xml> |
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215 |
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216 <!--Core Layers--> |
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217 |
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218 <xml name="layer_Dense"> |
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219 <param argument="units" type="integer" value="" optional="false" label="units" help="Positive integer, dimensionality of the output space."/> |
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220 <section name="layer_options" title="Layer Advanced Options" expanded="false"> |
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221 <expand macro="keras_activations"/> |
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222 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true" /> |
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223 <expand macro="keras_initializers" default_kernel="true"/> |
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224 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/> |
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225 <expand macro="keras_regularizers"/> |
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226 <expand macro="keras_regularizers" argument="bias_regularizer"/> |
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227 <expand macro="keras_regularizers" argument="activity_regularizer"/> |
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228 <expand macro="keras_constraints"/> |
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229 <expand macro="keras_constraints" argument="bias_constraint"/> |
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230 </section> |
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231 <yield/> |
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232 </xml> |
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233 |
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234 <xml name="layer_Dropout"> |
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235 <param argument="rate" type="float" value="" min="0." max="1.0" help="Fraction of the input units to drop."/> |
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236 <param argument="noise_shape" type="text" value="" help="1D integer tensor representing the shape of the |
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237 binary dropout mask that will be multiplied with the input."/> |
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238 <param argument="seed" type="integer" value="" min="0" optional="true" help="A Python integer to use as random seed."/> |
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239 <yield/> |
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240 </xml> |
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241 |
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242 <xml name="layer_Flatten"> |
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243 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
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244 <option value="channels_last">channels_last</option> |
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245 <option value="channels_first">channels_first</option> |
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246 </param> |
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247 <yield/> |
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248 </xml> |
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249 |
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250 <xml name="layer_Input"> |
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251 <param argument="shape" type="text" value="" help="A shape tuple (integer), not including the batch size.For instance, `shape=(32,)`"/> |
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252 <!--param argument="batch_shape" type="text" value="" optional="true" help="A shape tuple (integer), including the batch size.For instance, `batch_shape=(10, 32)`"/--> |
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253 <param argument="name" type="text" value="" optional="true" help="An optional string name for the layer. Unique. autogenerated if it isn't provided."/> |
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254 <param argument="dtype" type="select" help="The data type expected by the input"> |
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255 <option value="float32" selected="true">float32</option> |
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256 <option value="float64">float64</option> |
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257 <option value="int32">int32</option> |
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258 <option value="int64">int64</option> |
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259 <!--TODO add more DTYPEs--> |
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260 </param> |
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261 <param argument="sparse" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" /> |
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262 <!--param argument="tensor" type="data" format="zip" help="Optional existing tensor to wrap into the `Input` layer."/ --> |
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263 <yield/> |
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264 </xml> |
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265 |
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266 <xml name="layer_Reshape"> |
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267 <param argument="target_shape" type="text" value="" help="Tuple of integers. Does not include the batch axis."/> |
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268 <yield/> |
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269 </xml> |
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270 |
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271 <xml name="layer_Permute"> |
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272 <param argument="dims" type="text" value="" help="Tuple of integers. Permutation pattern, does not include the samples dimension. |
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273 Indexing starts at 1. For instance, (2, 1) permutes the first and second dimension of the input."/> |
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274 <yield/> |
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275 </xml> |
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276 |
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277 <xml name="layer_RepeatVector"> |
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278 <param argument="n" type="integer" value="" help="repetition factor"/> |
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279 </xml> |
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280 |
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281 <xml name="layer_Lambda"> |
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282 <param argument="function" type="text" value="lambda x: " help="The function to be evaluated. Only lambda function is supported!"/> |
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283 <yield/> |
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284 </xml> |
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285 |
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286 <xml name="layer_ActivityRegularization"> |
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287 <param argument="l1" type="float" value="0." min="0." help="L1 regularization factor (positive float)."/> |
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288 <param argument="l2" type="float" value="0." min="0." help="L2 regularization factor (positive float)."/> |
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289 <yield/> |
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290 </xml> |
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291 |
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292 <xml name="layer_Masking"> |
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293 <param argument="mask_value" type="float" value="0." help="Masks a sequence by using a mask value to skip timesteps."/> |
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294 <yield/> |
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295 </xml> |
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296 |
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297 <xml name="layer_SpatialDropout1D"> |
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298 <param argument="rate" type="float" value="" min="0." max="1." help="Fraction of the input units to drop."/> |
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299 <yield/> |
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300 </xml> |
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301 |
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302 <xml name="layer_SpatialDropout2D"> |
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303 <param argument="rate" type="float" value="" min="0." max="1." help="Fraction of the input units to drop."/> |
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304 <param argument="data_format" type="select"> |
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305 <option value="channels_last" selected="true">channels_last - the channels dimension (the depth) is at index 3</option> |
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306 <option value="channels_first">channels_first - the channels dimension (the depth) is at index 1</option> |
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307 </param> |
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308 <yield/> |
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309 </xml> |
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310 |
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311 <xml name="layer_SpatialDropout3D"> |
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312 <param argument="rate" type="float" value="" min="0." max="1." help="Fraction of the input units to drop."/> |
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313 <param argument="data_format" type="select"> |
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314 <option value="channels_last" selected="true">channels_last - the channels dimension (the depth) is at index 4</option> |
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315 <option value="channels_first">channels_first - the channels dimension (the depth) is at index 1</option> |
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316 </param> |
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317 <yield/> |
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318 </xml> |
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319 |
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320 <!--Convolutional Layers--> |
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321 |
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322 <xml name="layer_Conv1D"> |
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323 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/> |
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324 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of a single integer, specifying the length of the 1D convolution window."/> |
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325 <param argument="strides" type="text" value="1" help="An integer or tuple/list of a single integer, specifying the stride length of the convolution."/> |
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326 <section name="layer_options" title="Layer Advanced Options" expanded="false"> |
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327 <param argument="padding" type="select" help=""> |
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328 <option value="valid" selected="true">valid - no padding</option> |
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329 <option value="same">same - output has the same length as the original input</option> |
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330 <option value="causal">causal - causal (dilated) convolutions</option> |
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331 </param> |
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332 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
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333 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, steps, channels)</option> |
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334 <option value="channels_first">channels_first - inputs with shape (batch, channels, steps)</option> |
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335 </param> |
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336 <param argument="dilation_rate" type="text" value="1" help="an integer or tuple/list of a single integer, specifying the dilation rate to use for dilated convolution."/> |
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337 <expand macro="keras_activations"/> |
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338 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true"/> |
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339 <expand macro="keras_initializers" default_kernel="true"/>\ |
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340 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/> |
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341 <expand macro="keras_regularizers"/> |
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342 <expand macro="keras_regularizers" argument="bias_regularizer"/> |
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343 <expand macro="keras_regularizers" argument="activity_regularizer"/> |
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344 <expand macro="keras_constraints"/> |
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345 <expand macro="keras_constraints" argument="bias_constraint"/> |
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346 </section> |
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347 <yield/> |
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348 </xml> |
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349 |
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350 <xml name="layer_Conv2D"> |
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351 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/> |
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352 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 2 integers, specifying the height and width of the 2D convolution window."/> |
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353 <param argument="strides" type="text" value="1" help="An integer or tuple/list of 2 integers, specifying the strides of the convolution along the height and width."/> |
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354 <section name="layer_options" title="Layer Advanced Options" expanded="false"> |
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355 <param argument="padding" type="select" help=""> |
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356 <option value="valid" selected="true">valid - no padding</option> |
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357 <option value="same">same - output has the same length as the original input</option> |
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358 <!--option value="causal">causal - causal (dilated) convolutions</option--> |
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359 </param> |
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360 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
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361 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option> |
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362 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option> |
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363 </param> |
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364 <param argument="dilation_rate" type="text" value="1" help="an integer or tuple/list of 2 integers, specifying the dilation rate to use for dilated convolution."/> |
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365 <expand macro="keras_activations"/> |
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366 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true"/> |
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367 <expand macro="keras_initializers" default_kernel="true"/>\ |
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368 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/> |
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369 <expand macro="keras_regularizers"/> |
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370 <expand macro="keras_regularizers" argument="bias_regularizer"/> |
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371 <expand macro="keras_regularizers" argument="activity_regularizer"/> |
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372 <expand macro="keras_constraints"/> |
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373 <expand macro="keras_constraints" argument="bias_constraint"/> |
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374 </section> |
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375 <yield/> |
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376 </xml> |
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377 |
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378 <xml name="layer_SeparableConv1D"> |
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379 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/> |
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380 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of a single integer, specifying the length of the 1D convolution window."/> |
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381 <param argument="strides" type="text" value="1" help="An integer or tuple/list of single integer, specifying the stride length of the convolution. "/> |
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382 <section name="layer_options" title="Layer Advanced Options" expanded="false"> |
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383 <param argument="padding" type="select" help=""> |
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384 <option value="valid" selected="true">valid - no padding</option> |
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385 <option value="same">same - output has the same length as the original input</option> |
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386 <!--option value="causal">causal - causal (dilated) convolutions</option--> |
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387 </param> |
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388 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
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389 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, steps, channels)</option> |
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390 <option value="channels_first">channels_first - inputs with shape (batch, channels, steps)</option> |
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391 </param> |
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392 <param argument="dilation_rate" type="text" value="1" help="an integer or tuple/list of a single integer, specifying the dilation rate to use for dilated convolution. "/> |
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393 <param argument="depth_multiplier" type="integer" value="1" help="The number of depthwise convolution output channels for each input channel."/> |
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394 <expand macro="keras_activations"/> |
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395 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true"/> |
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396 <expand macro="keras_initializers" argument="depthwise_initializer" default_kernel="true"/> |
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397 <expand macro="keras_initializers" argument="pointwise_initializer" default_kernel="true"/> |
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398 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/> |
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399 <expand macro="keras_regularizers" argument="depthwise_regularizer"/> |
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400 <expand macro="keras_regularizers" argument="pointwise_regularizer"/> |
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401 <expand macro="keras_regularizers" argument="bias_regularizer"/> |
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402 <expand macro="keras_regularizers" argument="activity_regularizer"/> |
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403 <expand macro="keras_constraints" argument="depthwise_constraint"/> |
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404 <expand macro="keras_constraints" argument="pointwise_constraint"/> |
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405 <expand macro="keras_constraints" argument="bias_constraint"/> |
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406 </section> |
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407 <yield/> |
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408 </xml> |
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409 |
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410 <xml name="layer_SeparableConv2D"> |
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411 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/> |
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412 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 2 integers, specifying the height and width of the 2D convolution window."/> |
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413 <param argument="strides" type="text" value="1" help="An integer or tuple/list of 2 integers, specifying the strides of the convolution along the height and width."/> |
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414 <section name="layer_options" title="Layer Advanced Options" expanded="false"> |
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415 <param argument="padding" type="select" help=""> |
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416 <option value="valid" selected="true">valid - no padding</option> |
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417 <option value="same">same - output has the same length as the original input</option> |
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418 <!--option value="causal">causal - causal (dilated) convolutions</option--> |
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419 </param> |
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420 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
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421 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option> |
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422 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option> |
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423 </param> |
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424 <param argument="dilation_rate" type="text" value="1" help="an integer or tuple/list of 2 integers, specifying the dilation rate to use for dilated convolution."/> |
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425 <param argument="depth_multiplier" type="integer" value="1" help="The number of depthwise convolution output channels for each input channel."/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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426 <expand macro="keras_activations"/> |
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427 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true"/> |
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428 <expand macro="keras_initializers" argument="depthwise_initializer" default_kernel="true"/> |
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429 <expand macro="keras_initializers" argument="pointwise_initializer" default_kernel="true"/> |
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430 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/> |
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431 <expand macro="keras_regularizers" argument="depthwise_regularizer"/> |
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432 <expand macro="keras_regularizers" argument="pointwise_regularizer"/> |
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433 <expand macro="keras_regularizers" argument="bias_regularizer"/> |
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434 <expand macro="keras_regularizers" argument="activity_regularizer"/> |
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435 <expand macro="keras_constraints" argument="depthwise_constraint"/> |
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436 <expand macro="keras_constraints" argument="pointwise_constraint"/> |
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437 <expand macro="keras_constraints" argument="bias_constraint"/> |
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438 </section> |
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439 <yield/> |
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440 </xml> |
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441 |
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442 <xml name="layer_DepthwiseConv2D"> |
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443 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/> |
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444 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 2 integers, specifying the height and width of the 2D convolution window."/> |
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445 <param argument="strides" type="text" value="1" help="An integer or tuple/list of 2 integers, specifying the strides of the convolution along the height and width."/> |
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446 <section name="layer_options" title="Layer Advanced Options" expanded="false"> |
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447 <param argument="padding" type="select" help=""> |
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448 <option value="valid" selected="true">valid - no padding</option> |
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449 <option value="same">same - output has the same length as the original input</option> |
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450 <!--option value="causal">causal - causal (dilated) convolutions</option--> |
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451 </param> |
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452 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
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453 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option> |
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454 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option> |
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455 </param> |
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456 <param argument="dilation_rate" type="text" value="1" help="an integer or tuple/list of 2 integers, specifying the dilation rate to use for dilated convolution."/> |
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457 <param argument="depth_multiplier" type="integer" value="1" help="The number of depthwise convolution output channels for each input channel."/> |
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458 <expand macro="keras_activations"/> |
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459 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true"/> |
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460 <expand macro="keras_initializers" argument="depthwise_initializer" default_kernel="true"/> |
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461 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/> |
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462 <expand macro="keras_regularizers" argument="depthwise_regularizer"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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463 <expand macro="keras_regularizers" argument="pointwise_regularizer"/> |
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464 <expand macro="keras_regularizers" argument="bias_regularizer"/> |
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465 <expand macro="keras_regularizers" argument="activity_regularizer"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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466 <expand macro="keras_constraints" argument="depthwise_constraint"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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467 <expand macro="keras_constraints" argument="bias_constraint"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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468 </section> |
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469 <yield/> |
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470 </xml> |
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471 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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472 <xml name="layer_Conv2DTranspose"> |
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473 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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474 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 2 integers, specifying the height and width of the 2D convolution window."/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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475 <param argument="strides" type="text" value="1" help="An integer or tuple/list of 2 integers, specifying the strides of the convolution along the height and width."/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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476 <section name="layer_options" title="Layer Advanced Options" expanded="false"> |
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477 <param argument="padding" type="select" help=""> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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478 <option value="valid" selected="true">valid - no padding</option> |
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479 <option value="same">same - output has the same length as the original input</option> |
44f0ce9488fb
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480 <!--option value="causal">causal - causal (dilated) convolutions</option--> |
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481 </param> |
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482 <param argument="output_padding" type="text" value="" help="An integer or tuple/list of 2 integers, specifying the amount of padding along the height and width of the output tensor."/> |
44f0ce9488fb
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483 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
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484 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option> |
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485 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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486 </param> |
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487 <param argument="dilation_rate" type="text" value="1" help="an integer or tuple/list of 2 integers, specifying the dilation rate to use for dilated convolution."/> |
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488 <expand macro="keras_activations"/> |
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489 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true"/> |
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490 <expand macro="keras_initializers" default_kernel="true"/> |
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491 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/> |
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492 <expand macro="keras_regularizers" /> |
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493 <expand macro="keras_regularizers" argument="bias_regularizer"/> |
44f0ce9488fb
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494 <expand macro="keras_regularizers" argument="activity_regularizer"/> |
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495 <expand macro="keras_constraints"/> |
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496 <expand macro="keras_constraints" argument="bias_constraint"/> |
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497 </section> |
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498 <yield/> |
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499 </xml> |
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500 |
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501 <xml name="layer_Conv3D"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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502 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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503 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 3 integers, specifying the depth, height and width of the 3D convolution window."/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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504 <param argument="strides" type="text" value="1" help="An integer or tuple/list of 3 integers, specifying the strides of the convolution along each spatial dimension."/> |
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505 <section name="layer_options" title="Layer Advanced Options" expanded="false"> |
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506 <param argument="padding" type="select" help=""> |
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507 <option value="valid" selected="true">valid - no padding</option> |
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508 <option value="same">same - output has the same length as the original input</option> |
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509 <!--option value="causal">causal - causal (dilated) convolutions</option--> |
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510 </param> |
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511 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
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512 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, spatial_dim1, spatial_dim2, spatial_dim3, channels)</option> |
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513 <option value="channels_first">channels_first - inputs with shape (batch, channels, spatial_dim1, spatial_dim2, spatial_dim3)</option> |
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514 </param> |
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515 <param argument="dilation_rate" type="text" value="1" help="an integer or tuple/list of 3 integers, specifying the dilation rate to use for dilated convolution."/> |
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516 <expand macro="keras_activations"/> |
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517 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true"/> |
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518 <expand macro="keras_initializers" default_kernel="true"/> |
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519 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/> |
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520 <expand macro="keras_regularizers" /> |
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521 <expand macro="keras_regularizers" argument="bias_regularizer"/> |
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522 <expand macro="keras_regularizers" argument="activity_regularizer"/> |
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523 <expand macro="keras_constraints"/> |
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524 <expand macro="keras_constraints" argument="bias_constraint"/> |
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525 </section> |
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526 <yield/> |
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527 </xml> |
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528 |
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529 <xml name="layer_Conv3DTranspose"> |
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530 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/> |
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531 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 3 integers, specifying the depth, height and width of the 3D convolution window."/> |
44f0ce9488fb
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532 <param argument="strides" type="text" value="1" help="An integer or tuple/list of 3 integers, specifying the strides of the convolution along each spatial dimension."/> |
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533 <section name="layer_options" title="Layer Advanced Options" expanded="false"> |
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534 <param argument="padding" type="select" help=""> |
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535 <option value="valid" selected="true">valid - no padding</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
536 <option value="same">same - output has the same length as the original input</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
537 <!--option value="causal">causal - causal (dilated) convolutions</option--> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
538 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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changeset
|
539 <param argument="output_padding" type="text" value="" help="An integer or tuple/list of 3 integers, specifying the amount of padding along the depth, height, and width. "/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
540 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
541 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, spatial_dim1, spatial_dim2, spatial_dim3, channels)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
542 <option value="channels_first">channels_first - inputs with shape (batch, channels, spatial_dim1, spatial_dim2, spatial_dim3)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
543 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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changeset
|
544 <param argument="dilation_rate" type="text" value="1" help="an integer or tuple/list of 3 integers, specifying the dilation rate to use for dilated convolution."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
545 <expand macro="keras_activations"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
546 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
547 <expand macro="keras_initializers" default_kernel="true"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
548 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
549 <expand macro="keras_regularizers" /> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
550 <expand macro="keras_regularizers" argument="bias_regularizer"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
551 <expand macro="keras_regularizers" argument="activity_regularizer"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
552 <expand macro="keras_constraints"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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|
553 <expand macro="keras_constraints" argument="bias_constraint"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
554 </section> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
555 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
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556 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
557 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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558 <xml name="layer_Cropping1D"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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559 <param argument="cropping" type="text" value="(1, 1)" help="int or tuple of int (length 2) How many units should be trimmed off at the beginning and end of the cropping dimension (axis 1). |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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560 If a single int is provided, the same value will be used for both."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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561 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
562 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
563 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
564 <xml name="layer_Cropping2D"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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|
565 <param argument="cropping" type="text" value="((0, 0), (0, 0))" help="int, or tuple of 2 ints, or tuple of 2 tuples of 2 ints."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
566 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
567 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
568 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
569 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
570 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
571 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
572 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
573 <xml name="layer_Cropping3D"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
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574 <param argument="cropping" type="text" value="((1, 1), (1, 1), (1, 1))" help="int, or tuple of 3 ints, or tuple of 3 tuples of 2 ints."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
575 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
576 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, spatial_dim1, spatial_dim2, spatial_dim3, channels)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
577 <option value="channels_first">channels_first - inputs with shape (batch, channels, spatial_dim1, spatial_dim2, spatial_dim3)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
578 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
579 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
580 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
581 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
582 <xml name="layer_UpSampling1D"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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583 <param argument="size" type="integer" value="2" min="0" help="integer. Upsampling factor."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
584 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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585 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
586 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
587 <xml name="layer_UpSampling2D"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
588 <param argument="size" type="text" value="(2, 2)" help="int, or tuple of 2 integers. The upsampling factors for rows and columns."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
589 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
590 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
591 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
592 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
593 <param argument="interpolation" type="select"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
594 <option value="nearest" selected="true">nearest</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
595 <option value="bilinear">bilinear</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
596 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
597 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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changeset
|
598 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
599 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
600 <xml name="layer_UpSampling3D"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
601 <param argument="size" type="text" value="(2, 2, 2)" help="int, or tuple of 3 integers. The upsampling factors for dim1, dim2 and dim3."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
602 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
603 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, spatial_dim1, spatial_dim2, spatial_dim3, channels)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
604 <option value="channels_first">channels_first - inputs with shape (batch, channels, spatial_dim1, spatial_dim2, spatial_dim3)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
605 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
606 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
607 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
608 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
609 <xml name="layer_ZeroPadding1D"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
610 <param argument="padding" type="text" value="1" help="int, or tuple of int (length 2)"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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611 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
612 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
613 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
614 <xml name="layer_ZeroPadding2D"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
615 <param argument="padding" type="text" value="(1, 1)" help="int, or tuple of 2 ints, or tuple of 2 tuples of 2 ints."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
616 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
617 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
618 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
619 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
620 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
621 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
622 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
623 <xml name="layer_ZeroPadding3D"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
624 <param argument="padding" type="text" value="(1, 1, 1)" help="int, or tuple of 3 ints, or tuple of 3 tuples of 2 ints."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
625 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
626 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, spatial_dim1, spatial_dim2, spatial_dim3, channels)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
627 <option value="channels_first">channels_first - inputs with shape (batch, channels, spatial_dim1, spatial_dim2, spatial_dim3)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
628 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
629 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
630 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
631 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
632 <!--Pooling Layers--> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
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633 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
634 <xml name="layer_MaxPooling1D"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
635 <param name="pool_size" type="integer" value="2" help="Integer, size of the max pooling windows."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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|
636 <param name="strides" type="integer" value="" help="Integer, or None. Factor by which to downscale. E.g. 2 will halve the input. If None, it will default to pool_size."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
637 <param argument="padding" type="select" > |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
638 <option value="valid" selected="true">valid - no padding</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
639 <option value="same">same - output has the same length as the original input</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
640 <!--option value="causal">causal - causal (dilated) convolutions</option--> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
641 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
642 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
643 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, steps, channels)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
644 <option value="channels_first">channels_first - inputs with shape (batch, channels, steps)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
645 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
646 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
647 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
648 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
649 <xml name="layer_MaxPooling2D"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
650 <param name="pool_size" type="text" value="(2, 2)" help="integer or tuple of 2 integers, factors by which to downscale (vertical, horizontal)"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
651 <param name="strides" type="text" value="" help="Integer, tuple of 2 integers, or None. Strides values. If None, it will default to pool_size."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
652 <param argument="padding" type="select" > |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
653 <option value="valid" selected="true">valid - no padding</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
654 <option value="same">same - output has the same length as the original input</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
655 <!--option value="causal">causal - causal (dilated) convolutions</option--> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
656 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
657 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
658 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
659 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
660 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
661 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
662 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
663 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
664 <xml name="layer_MaxPooling3D"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
665 <param name="pool_size" type="text" value="(2, 2, 2)" help="tuple of 3 integers, factors by which to downscale (dim1, dim2, dim3). |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
666 (2, 2, 2) will halve the size of the 3D input in each dimension."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
667 <param name="strides" type="text" value="" help="tuple of 3 integers, or None. If None, it will default to pool_size."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
668 <param argument="padding" type="select" > |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
669 <option value="valid" selected="true">valid - no padding</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
670 <option value="same">same - output has the same length as the original input</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
671 <!--option value="causal">causal - causal (dilated) convolutions</option--> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
672 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
673 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
674 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, spatial_dim1, spatial_dim2, spatial_dim3, channels)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
675 <option value="channels_first">channels_first - inputs with shape (batch, channels, spatial_dim1, spatial_dim2, spatial_dim3)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
676 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
677 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
678 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
679 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
680 <xml name="layer_AveragePooling1D"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
681 <param name="pool_size" type="integer" value="2" help="Integer, size of the max pooling windows."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
682 <param name="strides" type="integer" value="" help="Integer, or None. Factor by which to downscale. E.g. 2 will halve the input. If None, it will default to pool_size."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
683 <param argument="padding" type="select" > |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
684 <option value="valid" selected="true">valid - no padding</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
685 <option value="same">same - output has the same length as the original input</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
686 <!--option value="causal">causal - causal (dilated) convolutions</option--> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
687 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
688 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
689 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, steps, channels)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
690 <option value="channels_first">channels_first - inputs with shape (batch, channels, steps)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
691 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
692 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
693 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
694 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
695 <xml name="layer_AveragePooling2D"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
696 <param name="pool_size" type="text" value="(2, 2)" help="integer or tuple of 2 integers, factors by which to downscale (vertical, horizontal)"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
697 <param name="strides" type="text" value="" help=" Integer, tuple of 2 integers, or None. Strides values. If None, it will default to pool_size."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
698 <param argument="padding" type="select" > |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
699 <option value="valid" selected="true">valid - no padding</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
700 <option value="same">same - output has the same length as the original input</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
701 <!--option value="causal">causal - causal (dilated) convolutions</option--> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
702 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
703 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
704 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
705 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
706 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
707 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
708 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
709 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
710 <xml name="layer_AveragePooling3D"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
711 <param name="pool_size" type="text" value="(2, 2, 2)" help="tuple of 3 integers, factors by which to downscale (dim1, dim2, dim3). |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
712 (2, 2, 2) will halve the size of the 3D input in each dimension."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
713 <param name="strides" type="text" value="" help="tuple of 3 integers, or None. If None, it will default to pool_size."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
714 <param argument="padding" type="select" > |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
715 <option value="valid" selected="true">valid - no padding</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
716 <option value="same">same - output has the same length as the original input</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
717 <!--option value="causal">causal - causal (dilated) convolutions</option--> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
718 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
719 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
720 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, spatial_dim1, spatial_dim2, spatial_dim3, channels)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
721 <option value="channels_first">channels_first - inputs with shape (batch, channels, spatial_dim1, spatial_dim2, spatial_dim3)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
722 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
723 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
724 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
725 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
726 <xml name="layer_GlobalMaxPooling1D"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
727 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
728 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, steps, channels)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
729 <option value="channels_first">channels_first - inputs with shape (batch, channels, steps)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
730 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
731 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
732 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
733 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
734 <xml name="layer_GlobalMaxPooling2D"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
735 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
736 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
737 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
738 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
739 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
740 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
741 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
742 <xml name="layer_GlobalMaxPooling3D"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
743 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
744 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, spatial_dim1, spatial_dim2, spatial_dim3, channels)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
745 <option value="channels_first">channels_first - inputs with shape (batch, channels, spatial_dim1, spatial_dim2, spatial_dim3)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
746 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
747 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
748 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
749 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
750 <xml name="layer_GlobalAveragePooling1D"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
751 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
752 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, steps, channels)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
753 <option value="channels_first">channels_first - inputs with shape (batch, channels, steps)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
754 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
755 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
756 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
757 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
758 <xml name="layer_GlobalAveragePooling2D"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
759 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
760 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
761 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
762 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
763 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
764 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
765 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
766 <xml name="layer_GlobalAveragePooling3D"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
767 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
768 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, spatial_dim1, spatial_dim2, spatial_dim3, channels)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
769 <option value="channels_first">channels_first - inputs with shape (batch, channels, spatial_dim1, spatial_dim2, spatial_dim3)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
770 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
771 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
772 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
773 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
774 <!--Locally-connected Layers--> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
775 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
776 <xml name="layer_LocallyConnected1D"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
777 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
778 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of a single integer, specifying the length of the 1D convolution window."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
779 <param argument="strides" type="text" value="1" help="An integer or tuple/list of a single integer, specifying the stride length of the convolution."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
780 <section name="layer_options" title="Layer Advanced Options" expanded="false"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
781 <param argument="padding" type="select" help=""> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
782 <option value="valid" selected="true">valid - no padding</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
783 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
784 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
785 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, steps, channels)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
786 <option value="channels_first">channels_first - inputs with shape (batch, channels, steps)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
787 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
788 <expand macro="keras_activations"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
789 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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|
790 <expand macro="keras_initializers" default_kernel="true"/>\ |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
791 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
792 <expand macro="keras_regularizers"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
793 <expand macro="keras_regularizers" argument="bias_regularizer"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
794 <expand macro="keras_regularizers" argument="activity_regularizer"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
795 <expand macro="keras_constraints"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
796 <expand macro="keras_constraints" argument="bias_constraint"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
797 </section> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
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|
798 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
799 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
800 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
801 <xml name="layer_LocallyConnected2D"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
802 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
803 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 2 integers, specifying the height and width of the 2D convolution window."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
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|
804 <param argument="strides" type="text" value="(1, 1)" help="An integer or tuple/list of 2 integers, specifying the strides of the convolution along the height and width."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
805 <section name="layer_options" title="Layer Advanced Options" expanded="false"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
806 <param argument="padding" type="select" help=""> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
807 <option value="valid" selected="true">valid - no padding</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
808 <option value="same">same - output has the same length as the original input</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
809 <!--option value="causal">causal - causal (dilated) convolutions</option--> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
810 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
811 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
812 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
813 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
814 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
815 <expand macro="keras_activations"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
816 <param argument="use_bias" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
817 <expand macro="keras_initializers" default_kernel="true"/>\ |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
818 <expand macro="keras_initializers" argument="bias_initializer" default_bias="true"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
819 <expand macro="keras_regularizers"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
820 <expand macro="keras_regularizers" argument="bias_regularizer"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
821 <expand macro="keras_regularizers" argument="activity_regularizer"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
822 <expand macro="keras_constraints"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
823 <expand macro="keras_constraints" argument="bias_constraint"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
824 </section> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
825 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
826 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
827 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
828 <!--Recurrent Layers> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
829 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
830 <xml name="layer_RNN"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
831 <param argument="cell" > |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
832 <section name="layer_options" title="Layer Advanced Options" expanded="false"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
833 <param argument="return_sequences" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" /> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
834 <param argument="return_state" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" /> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
835 <param argument="go_backwards" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" /> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
836 <param argument="stateful" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" /> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
837 <param argument="unroll" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" /> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
838 <param argument="input_dim" > |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
839 <param argument="input_length" > |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
840 </section> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
841 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
842 </xml--> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
843 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
844 <xml name="layer_LSTM"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
845 <param argument="units" type="integer" value="" min="1" help="Positive integer, dimensionality of the output space."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
846 <section name="layer_options" title="Layer Advanced Options" expanded="false"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
847 <expand macro="keras_activations"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
848 </section> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
849 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
850 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
851 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
852 <!--Embedding Layers--> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
853 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
854 <xml name="layer_Embedding"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
855 <param argument="input_dim" type="integer" value="" min="0" help="int > 0. Size of the vocabulary, i.e. maximum integer index + 1."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
856 <param argument="output_dim" type="integer" value="" min="0" help="int >= 0. Dimension of the dense embedding."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
857 <section name="layer_options" title="Layer Advanced Options" expanded="false"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
858 <expand macro="keras_initializers" argument="embeddings_initializer" default_embeddings="true"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
859 <expand macro="keras_regularizers" argument="embeddings_regularizer"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
860 <expand macro="keras_regularizers" argument="activity_regularizer"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
861 <expand macro="keras_constraints" argument="embeddings_constraint"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
862 <param argument="mask_zero" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
863 <param argument="input_length" type="integer" value="" optional="true" min="0" help="Length of input sequences. Required if connecting Flatten then Dense layers upstream"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
864 </section> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
865 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
866 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
867 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
868 <!--Merge Layers--> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
869 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
870 <xml name="layer_merge"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
871 <param name="merging_layers" type="text" value="[ ]" label="Type the layer index numbers in a list" help="List of numbers"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
872 <sanitizer> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
873 <valid initial="default"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
874 <add value="["/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
875 <add value="]"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
876 </valid> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
877 </sanitizer> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
878 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
879 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
880 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
881 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
882 <xml name="layer_Concatenate" token_type="integer" token_default_value="-1" token_help="Axis along which to concatenate."> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
883 <expand macro="layer_merge"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
884 <param argument="axis" type="@TYPE@" value="@DEFAULT_VALUE@" help="@HELP@"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
885 </expand> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
886 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
887 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
888 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
889 <xml name="layer_Dot"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
890 <expand macro="layer_Concatenate" type="text" default_value="" help="Integer or tuple of integers, axis or axes along which to take the dot product."> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
891 <param argument="normalize" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" label="Whether to L2-normalize samples along the dot product axis before taking the dot product?"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
892 </expand> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
893 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
894 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
895 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
896 <!--Advanced Activations Layers--> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
897 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
898 <xml name="layer_LeakyReLU"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
899 <param argument="alpha" type="float" value="0.3" min="0." help="float >= 0. Negative slope coefficient."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
900 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
901 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
902 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
903 <xml name="layer_PReLU"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
904 <expand macro="keras_initializers" argument="alpha_initializer" default_bias="true"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
905 <expand macro="keras_regularizers" argument="alpha_regularizer"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
906 <expand macro="keras_constraints" argument="alpha_constraint"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
907 <param argument="shared_axes" type="text" value="" help="the axes along which to share learnable parameters for the activation function. E.g. [1, 2]"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
908 <sanitizer> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
909 <valid initial="default"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
910 <add value="["/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
911 <add value="]"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
912 </valid> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
913 </sanitizer> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
914 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
915 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
916 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
917 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
918 <xml name="layer_ELU"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
919 <param argument="alpha" type="float" value="1.0" help="scale for the negative factor."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
920 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
921 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
922 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
923 <xml name="layer_ThresholdedReLU"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
924 <param argument="theta" type="float" value="1.0" help="float >= 0. Threshold location of activation."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
925 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
926 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
927 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
928 <xml name="layer_Softmax"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
929 <param argument="axis" type="integer" value="-1" help="Integer, axis along which the softmax normalization is applied."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
930 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
931 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
932 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
933 <xml name="layer_ReLU"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
934 <param argument="max_value" type="float" value="" min="0." help="float >= 0. Maximum activation value."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
935 <param argument="negative_slope" type="float" value="0." min="0." help="float >= 0. Negative slope coefficient."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
936 <param argument="max_value" type="float" value="0." help="float. Threshold value for thresholded activation."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
937 <yield/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
938 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
939 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
940 <!--Normalization Layers--> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
941 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
942 <!--Noise layers--> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
943 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
944 <xml name="inbound_nodes_index"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
945 <param name="inbound_nodes" type="integer" value="" label="Type the index number of input layer" |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
946 help="Find the index number at the left top corner of layer configuration block"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
947 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
948 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
949 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
950 <!-- Keras CallBacks --> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
951 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
952 <xml name="keras_callbacks"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
953 <repeat name="callbacks" min="1" max="5" title="callback"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
954 <conditional name="callback_selection"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
955 <param name="callback_type" type="select" label="Choose a callback"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
956 <option value="None" selected="true">None</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
957 <option value="EarlyStopping">EarlyStopping -- Stop training when a monitored quantity has stopped improving</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
958 <!--option value="KerasTensorBoard">TensorBoard</option--> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
959 <!--option value="KerasLearningRateScheduler">LearningRateScheduler</option--> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
960 <!--option value="RemoteMonitor">RemoteMonitor - Stream events to a server</option> --> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
961 <!--option value="ModelCheckpoint">ModelCheckpoint - Save the model after every epoch</option>--> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
962 <option value="TerminateOnNaN">TerminateOnNaN -- Terminates training when a NaN loss is encountered.</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
963 <option value="ReduceLROnPlateau">ReduceLROnPlateau -- Reduce learning rate when a metric has stopped improving</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
964 <option value="CSVLogger">CSVLogger -- Streams epoch results to a csv file</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
965 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
966 <when value="None"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
967 <when value="EarlyStopping"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
968 <expand macro="keras_callback_common_options"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
969 <param argument="min_delta" type="float" value="0" optional="true" help="Minimum change in the monitored quantity to qualify as an improvement."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
970 <param argument="patience" type="integer" value="0" min="0" help="Number of epochs with no improvement after which training will be stopped."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
971 <param argument="baseline" type="float" value="" optional="true" help="Baseline value for the monitored quantity to reach. Training will stop if the model doesn't show improvement over the baseline."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
972 <param argument="restore_best_weights" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="false" help="Whether to restore model weights from the epoch with the best value of the monitored quantity"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
973 </expand> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
974 </when> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
975 <!--when value="TensorBoard"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
976 <param argument="histogram_freq" /> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
977 <param argument="batch_size" /> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
978 <param argument="write_graph" /> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
979 <param argument="write_grads" /> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
980 <param argument="write_images" /> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
981 <param argument="embeddings_layer_names" /> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
982 <param argument="embeddings_metadata" /> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
983 <param argument="embeddings_data" /> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
984 <param argument="update_freq" /> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
985 </when--> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
986 <!--when value="RemoteMonitor"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
987 <param argument="root" type="text" value="http://localhost:9000" help="Root url of the target server."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
988 <param argument="path" type="text" value="/publish/epoch/end/" help="Path relative to root to which the events will be sent. E.g., root + '/publish/epoch/end/'"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
989 <param argument="field" type="text" value="data" optional="true" help="JSON field under which the data will be stored. The field is used only if the payload is sent within a form (i.e. send_as_json is set to False)."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
990 <param argument="headers" type="text" value="" optional="true" help="Dictionary; optional custom HTTP headers."> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
991 <sanitizer> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
992 <valid initial="default"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
993 <add value="{"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
994 <add value="}"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
995 </valid> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
996 </sanitizer> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
997 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
998 <param argument="send_as_json" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="false" help="Whether the request should be send as application/json."/> |
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999 </when> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1000 <when value="ModelCheckpoint"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1001 <expand macro="keras_callback_common_options"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1002 <param argument="save_best_only" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="false" help="If True, the latest best model according to the quantity monitored will not be overwritten."/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1003 <param argument="save_weights_only" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="true" help="If True, then only the model's weights will be saved, else the full model is saved."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1004 <param argument="period" type="integer" value="1" min="1" help="Interval (number of epochs) between checkpoints."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1005 </expand> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1006 </when>--> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1007 <when value="TerminateOnNaN"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1008 <when value="ReduceLROnPlateau"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1009 <expand macro="keras_callback_common_options"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1010 <param argument="factor" type="float" value="0.1" help="Factor by which the learning rate will be reduced. new_lr = lr * factor"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1011 <param argument="patience" type="integer" value="10" help="Number of epochs with no improvement after which learning rate will be reduced."/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1012 <param argument="min_delta" type="float" value="0.0001" help="Threshold for measuring the new optimum, to only focus on significant changes."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1013 <param argument="cooldown" type="integer" value="0" help="Number of epochs to wait before resuming normal operation after lr has been reduced."/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1014 <param argument="min_lr" type="float" value="0" help="Lower bound on the learning rate."/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1015 </expand> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1016 </when> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1017 <when value="CSVLogger"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1018 </conditional> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1019 </repeat> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1020 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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1021 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1022 <xml name="keras_callback_common_options"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1023 <param argument="monitor" type="select" help="Quantity to be monitored."> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1024 <option value="val_loss" selected="true">val_loss</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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changeset
|
1025 <option value="loss">loss</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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1026 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1027 <param argument="mode" type="select"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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1028 <option value="auto" selected="true">auto -- the direction is automatically inferred from the name of the monitored quantity</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1029 <option value="min">min -- training will stop when the quantity monitored has stopped decreasing</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1030 <option value="max">max -- training will stop when the quantity monitored has stopped increasing</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1031 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1032 <yield/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1033 </xml> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1034 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1035 <!--Batch online data generators--> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1036 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1037 <xml name="params_fasta_dna_batch_generator"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1038 <param argument="seq_length" type="integer" value="1000" optional="true" help="Integer. Sequence length or number of bases."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1039 <param argument="shuffle" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true" help="Whether to shuffle the data between epochs."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
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|
1040 <param argument="seed" type="integer" value="" optional="true" help="Integer, random seed for data shuffling"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1041 </xml> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1042 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1043 <xml name="params_fasta_protein_batch_generator"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1044 <expand macro="params_fasta_dna_batch_generator"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1045 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1046 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1047 <xml name="params_genomic_interval_batch_generator"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1048 <expand macro="params_fasta_dna_batch_generator"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1049 <param argument="blacklist_regions" type="select" help="Tabix-indexed list of regions from which we should not output sequences"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
1050 <option value="hg38" selected="true">hg38</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1051 <option value="hg19">hg19</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1052 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1053 <param argument="center_bin_to_predict" type="integer" value="200" optional="true" help="Query the tabix-indexed file for a region of length."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1054 <param argument="feature_thresholds" type="float" value="0.5" optional="true" help="Threshold values to determine target value."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1055 <param argument="random_state" type="integer" value="" optional="true" help="Random seed number, to control the sample position in each invertal."/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
1056 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1057 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
1058 <xml name="params_image_batch_generator"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1059 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1060 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
1061 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1062 <!--composite params macro--> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1063 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1064 <xml name="keras_compile_params_section"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1065 <section name="compile_params" title="Compile Parameters" expanded="true"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1066 <param name="loss" type="select" label="Select a loss function"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1067 <option value="binary_crossentropy" selected="true">binary_crossentropy</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1068 <option value="mean_squared_error">mse / MSE/ mean_squared_error</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1069 <option value="mean_absolute_error">mae / MAE / mean_absolute_error</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
1070 <option value="mean_absolute_percentage_error">mape / MAPE / mean_absolute_percentage_error</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
1071 <option value="mean_squared_logarithmic_error">msle / MSLE / mean_squared_logarithmic_error</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1072 <option value="squared_hinge">squared_hinge</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
1073 <option value="hinge">hinge</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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changeset
|
1074 <option value="categorical_hinge">categorical_hinge</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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1075 <option value="logcosh">logcosh</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
1076 <option value="categorical_crossentropy">categorical_crossentropy</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
1077 <option value="sparse_categorical_crossentropy">sparse_categorical_crossentropy</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
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1078 <option value="kullback_leibler_divergence">kld / KLD / kullback_leibler_divergence</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
1079 <option value="poisson">poisson</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
1080 <option value="cosine_proximity">cosine / cosine_proximity</option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
1081 </param> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
1082 <conditional name="optimizer_selection"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1083 <param name="optimizer_type" type="select" label="Select an optimizer"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
1084 <option value="SGD" selected="true">SGD - Stochastic gradient descent optimizer </option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
1085 <option value="RMSprop">RMSprop - RMSProp optimizer </option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
1086 <option value="Adagrad">Adagrad - Adagrad optimizer </option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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1087 <option value="Adadelta">Adadelta - Adadelta optimizer </option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1088 <option value="Adam">Adam - Adam optimizer </option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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1089 <option value="Adamax">Adamax - A variant of Adam based on the infinity norm </option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1090 <option value="Nadam">Nadam - Nesterov Adam optimizer </option> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1091 </param> |
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1092 <when value="SGD"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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1093 <expand macro="keras_optimizer_common"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1094 <param argument="momentum" type="float" value="0" optional="true" label="Momentum" |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1095 help="float >= 0. Parameter that accelerates SGD in the relevant direction and dampens oscillations."/> |
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1096 <param argument="decay" type="float" value="0" label="Decay" optional="true" help="float >= 0. Learning rate decay over each update."/> |
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1097 <param argument="nesterov" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" label="Whether to apply Nesterov momentum"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1098 </expand> |
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1099 </when> |
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1100 <when value="RMSprop"> |
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|
1101 <expand macro="keras_optimizer_common_more" lr="0.001"> |
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1102 <param argument="rho" type="float" value="0.9" optional="true" label="rho" help="float >= 0."/> |
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1103 </expand> |
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1104 </when> |
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1105 <when value="Adagrad"> |
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1106 <expand macro="keras_optimizer_common_more" lr="0.001"/> |
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1107 </when> |
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1108 <when value="Adadelta"> |
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1109 <expand macro="keras_optimizer_common_more" lr="1.0"> |
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1110 <param argument="rho" type="float" value="0.95" optional="true" label="rho" help="float >= 0."/> |
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1111 </expand> |
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1112 </when> |
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1113 <when value="Adam"> |
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1114 <expand macro="keras_optimizer_common_more" lr="0.001"> |
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1115 <param argument="beta_1" type="float" value="0.9" optional="true" label="beta_1" help="float, 0 < beta < 1. Generally close to 1."/> |
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1116 <param argument="beta_2" type="float" value="0.999" optional="true" label="beta_2" help="float, 0 < beta < 1. Generally close to 1."/> |
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1117 <param argument="amsgrad" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" label="Whether to apply the AMSGrad variant?" |
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1118 help="Refer to paper `On the Convergence of Adam and Beyond`"/> |
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1119 </expand> |
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1120 </when> |
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1121 <when value="Adamax"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1122 <expand macro="keras_optimizer_common_more" lr="0.002"> |
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1123 <param argument="beta_1" type="float" value="0.9" optional="true" label="beta_1" help="float, 0 < beta < 1. Generally close to 1."/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1124 <param argument="beta_2" type="float" value="0.999" optional="true" label="beta_2" help="float, 0 < beta < 1. Generally close to 1."/> |
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1125 </expand> |
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1126 </when> |
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1127 <when value="Nadam"> |
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1128 <expand macro="keras_optimizer_common" lr="0.002"> |
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1129 <param argument="beta_1" type="float" value="0.9" optional="true" label="beta_1" help="float, 0 < beta < 1. Generally close to 1."/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1130 <param argument="beta_2" type="float" value="0.999" optional="true" label="beta_2" help="float, 0 < beta < 1. Generally close to 1."/> |
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1131 <param argument="epsilon" type="float" value="" label="epsilon" optional="true" help="Fuzz factor. If `None`, defaults to `K.epsilon()`"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1132 <param argument="schedule_decay" type="float" value="0.004" optional="true" label="schedule_decay" help="float, 0 < beta < 1."/> |
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|
1133 </expand> |
44f0ce9488fb
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1134 </when> |
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1135 </conditional> |
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1136 <param name="metrics" type="select" optional="true" multiple="true" label="Select metrics"> |
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1137 <option value="acc" selected="true">acc / accruracy</option> |
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1138 <option value="binary_accuracy">binary_accuracy</option> |
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1139 <option value="categorical_accuracy">categorical_accuracy</option> |
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1140 <option value="sparse_categorical_accuracy">sparse_categorical_accuracy</option> |
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1141 <option value="mse">mse / MSE / mean_squared_error</option> |
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1142 <option value="mae">mae / MAE / mean_absolute_error</option> |
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1143 <option value="mae">mape / MAPE / mean_absolute_percentage_error</option> |
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1144 <option value="cosine_proximity">cosine_proximity</option> |
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1145 <option value="cosine">cosine</option> |
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1146 <option value="none">none</option> |
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1147 </param> |
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1148 </section> |
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1149 </xml> |
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1150 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1151 <xml name="keras_fit_params_section"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1152 <section name="fit_params" title="Fit Parameters" expanded="true"> |
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1153 <param name="epochs" type="integer" value="1" min="1" label="epochs"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1154 <param name="batch_size" type="integer" value="32" optional="true" label="batch_size" help="Integer or blank for 32"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1155 <param name="steps_per_epoch" type="integer" value="" optional="true" label="steps_per_epoch" help="The number of steps (batches of samples) before declaring one epoch finished and starting the next epoch. The default None is equal to the number of samples in your dataset divided by the batch size, or 1 if that cannot be determined."/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1156 <param name="validation_steps" type="integer" value="" optional="true" label="validation_steps" help="Default None. Total number of steps (batches of samples) to validate before stopping." /> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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changeset
|
1157 <!--`validation_freq` will be available in next keras version--> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1158 <!--param name="validation_freq" type="integer" value="1" optional="true" label="validation_freq" help="Integer only at current moment. If an integer, specifies how many training epochs to run before a new validation run is performed."/--> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1159 <expand macro="keras_callbacks"/> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1160 </section> |
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1161 </xml> |
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1162 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1163 <!--Citation--> |
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|
1164 <xml name="keras_citation"> |
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1165 <citation type="bibtex"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1166 @misc{chollet2015keras, |
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|
1167 title={Keras}, |
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|
1168 url={https://keras.io}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1169 author={Chollet, Fran\c{c}ois and others}, |
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|
1170 year={2015}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1171 howpublished={https://keras.io}, |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1172 } |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1173 </citation> |
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|
1174 </xml> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1175 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1176 <xml name="tensorflow_citation"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1177 <citation type="bibtex"> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1178 @misc{tensorflow2015-whitepaper, |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1179 title={ {TensorFlow}: Large-Scale Machine Learning on Heterogeneous Systems}, |
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|
1180 url={https://www.tensorflow.org/}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1181 note={Software available from tensorflow.org}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1182 author={ |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1183 Mart\'{\i}n~Abadi and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1184 Ashish~Agarwal and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1185 Paul~Barham and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1186 Eugene~Brevdo and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1187 Zhifeng~Chen and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1188 Craig~Citro and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1189 Greg~S.~Corrado and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1190 Andy~Davis and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1191 Jeffrey~Dean and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1192 Matthieu~Devin and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1193 Sanjay~Ghemawat and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
1194 Ian~Goodfellow and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
1195 Andrew~Harp and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
1196 Geoffrey~Irving and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
1197 Michael~Isard and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
1198 Yangqing Jia and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
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|
1199 Rafal~Jozefowicz and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
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|
1200 Lukasz~Kaiser and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
1201 Manjunath~Kudlur and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
1202 Josh~Levenberg and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
1203 Dandelion~Man\'{e} and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
1204 Rajat~Monga and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
1205 Sherry~Moore and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
1206 Derek~Murray and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
1207 Chris~Olah and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
1208 Mike~Schuster and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
1209 Jonathon~Shlens and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
1210 Benoit~Steiner and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
1211 Ilya~Sutskever and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
1212 Kunal~Talwar and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
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|
1213 Paul~Tucker and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
1214 Vincent~Vanhoucke and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
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|
1215 Vijay~Vasudevan and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1216 Fernanda~Vi\'{e}gas and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
1217 Oriol~Vinyals and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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|
1218 Pete~Warden and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1219 Martin~Wattenberg and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1220 Martin~Wicke and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1221 Yuan~Yu and |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1222 Xiaoqiang~Zheng}, |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1223 year={2015}, |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
1224 } |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
1225 </citation> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
1226 </xml> |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
1227 |
44f0ce9488fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1228 </macros> |