Mercurial > repos > bgruening > sklearn_clf_metrics
comparison main_macros.xml @ 26:44f0ce9488fb draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
author | bgruening |
---|---|
date | Fri, 09 Aug 2019 07:22:24 -0400 |
parents | 68afcd163b3d |
children | 5a21a631d2eb |
comparison
equal
deleted
inserted
replaced
25:68afcd163b3d | 26:44f0ce9488fb |
---|---|
1 <macros> | 1 <macros> |
2 <token name="@VERSION@">1.0.0.4</token> | 2 <token name="@VERSION@">1.0.7.10</token> |
3 | |
4 <token name="@ENSEMBLE_VERSION@">0.2.0</token> | |
3 | 5 |
4 <xml name="python_requirements"> | 6 <xml name="python_requirements"> |
5 <requirements> | 7 <requirements> |
6 <requirement type="package" version="3.6">python</requirement> | 8 <requirement type="package" version="3.6">python</requirement> |
7 <requirement type="package" version="0.20.3">scikit-learn</requirement> | 9 <requirement type="package" version="0.7.10">Galaxy-ML</requirement> |
8 <requirement type="package" version="0.24.2">pandas</requirement> | |
9 <requirement type="package" version="0.80">xgboost</requirement> | |
10 <requirement type="package" version="0.9.13">asteval</requirement> | |
11 <requirement type="package" version="0.6">skrebate</requirement> | |
12 <requirement type="package" version="0.4.2">imbalanced-learn</requirement> | |
13 <requirement type="package" version="0.16.0">mlxtend</requirement> | |
14 <yield/> | 10 <yield/> |
15 </requirements> | 11 </requirements> |
16 </xml> | 12 </xml> |
17 | 13 |
18 <xml name="macro_stdio"> | 14 <xml name="macro_stdio"> |
418 </repeat> | 414 </repeat> |
419 </xml> | 415 </xml> |
420 | 416 |
421 <xml name="sparse_target" token_label1="Select a sparse matrix:" token_label2="Select the tabular containing true labels:" token_multiple="False" token_format1="txt" token_format2="tabular" token_help1="" token_help2=""> | 417 <xml name="sparse_target" token_label1="Select a sparse matrix:" token_label2="Select the tabular containing true labels:" token_multiple="False" token_format1="txt" token_format2="tabular" token_help1="" token_help2=""> |
422 <param name="infile1" type="data" format="@FORMAT1@" label="@LABEL1@" help="@HELP1@"/> | 418 <param name="infile1" type="data" format="@FORMAT1@" label="@LABEL1@" help="@HELP1@"/> |
423 <param name="infile2" type="data" format="@FORMAT2@" label="@LABEL2@" help="@HELP2@"/> | 419 <expand macro="input_tabular_target"/> |
424 <param name="col2" multiple="@MULTIPLE@" type="data_column" data_ref="infile2" label="Select target column(s):"/> | |
425 </xml> | 420 </xml> |
426 | 421 |
427 <xml name="sl_mixed_input"> | 422 <xml name="sl_mixed_input"> |
428 <conditional name="input_options"> | 423 <conditional name="input_options"> |
429 <param name="selected_input" type="select" label="Select input type:"> | 424 <param name="selected_input" type="select" label="Select input type:"> |
430 <option value="tabular" selected="true">tabular data</option> | 425 <option value="tabular" selected="true">tabular data</option> |
431 <option value="sparse">sparse matrix</option> | 426 <option value="sparse">sparse matrix</option> |
427 <option value="seq_fasta">sequnences in a fasta file</option> | |
428 <option value="refseq_and_interval">reference genome and intervals</option> | |
432 </param> | 429 </param> |
433 <when value="tabular"> | 430 <when value="tabular"> |
434 <expand macro="samples_tabular" multiple1="true" multiple2="false"/> | 431 <expand macro="samples_tabular" multiple1="true" multiple2="false"/> |
435 </when> | 432 </when> |
436 <when value="sparse"> | 433 <when value="sparse"> |
437 <expand macro="sparse_target"/> | 434 <expand macro="sparse_target"/> |
438 </when> | 435 </when> |
436 <when value="seq_fasta"> | |
437 <expand macro="inputs_seq_fasta"/> | |
438 </when> | |
439 <when value="refseq_and_interval"> | |
440 <expand macro="inputs_refseq_and_interval"/> | |
441 </when> | |
442 </conditional> | |
443 </xml> | |
444 | |
445 <xml name="input_tabular_target"> | |
446 <param name="infile2" type="data" format="tabular" label="Dataset containing class labels or target values:"/> | |
447 <param name="header2" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="false" label="Does the dataset contain header:" /> | |
448 <conditional name="column_selector_options_2"> | |
449 <expand macro="samples_column_selector_options" column_option="selected_column_selector_option2" col_name="col2" multiple="false" infile="infile2"/> | |
450 </conditional> | |
451 </xml> | |
452 | |
453 <xml name="inputs_seq_fasta"> | |
454 <param name="fasta_path" type="data" format="fasta" label="Dataset containing fasta genomic/protein sequences" help="Sequences will be one-hot encoded to arrays."/> | |
455 <expand macro="input_tabular_target"/> | |
456 </xml> | |
457 | |
458 <xml name="inputs_refseq_and_interval"> | |
459 <param name="ref_genome_file" type="data" format="fasta" label="Dataset containing reference genomic sequence"/> | |
460 <param name="interval_file" type="data" format="interval" label="Dataset containing sequence intervals for training" help="interval. Sequences will be retrieved from the reference genome and one-hot encoded to training arrays."/> | |
461 <param name="target_file" type="data" format="bed" label="Dataset containing positions and features for target values." help="bed. The file will be compressed with `bgzip` and then indexed using `tabix`."/> | |
462 <param name="infile2" type="data" format="tabular" label="Dataset containing the feature list for prediction"/> | |
463 <param name="header2" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="false" label="Does the dataset contain header:" /> | |
464 <conditional name="column_selector_options_2"> | |
465 <expand macro="samples_column_selector_options" column_option="selected_column_selector_option2" col_name="col2" multiple="true" infile="infile2"/> | |
439 </conditional> | 466 </conditional> |
440 </xml> | 467 </xml> |
441 | 468 |
442 <!--Advanced options--> | 469 <!--Advanced options--> |
443 <xml name="nn_advanced_options"> | 470 <xml name="nn_advanced_options"> |
703 | 730 |
704 <xml name="sparse_preprocessors"> | 731 <xml name="sparse_preprocessors"> |
705 <param name="selected_pre_processor" type="select" label="Select a preprocessor:"> | 732 <param name="selected_pre_processor" type="select" label="Select a preprocessor:"> |
706 <option value="StandardScaler" selected="true">Standard Scaler (Standardizes features by removing the mean and scaling to unit variance)</option> | 733 <option value="StandardScaler" selected="true">Standard Scaler (Standardizes features by removing the mean and scaling to unit variance)</option> |
707 <option value="Binarizer">Binarizer (Binarizes data)</option> | 734 <option value="Binarizer">Binarizer (Binarizes data)</option> |
708 <option value="Imputer">Imputer (Completes missing values)</option> | |
709 <option value="MaxAbsScaler">Max Abs Scaler (Scales features by their maximum absolute value)</option> | 735 <option value="MaxAbsScaler">Max Abs Scaler (Scales features by their maximum absolute value)</option> |
710 <option value="Normalizer">Normalizer (Normalizes samples individually to unit norm)</option> | 736 <option value="Normalizer">Normalizer (Normalizes samples individually to unit norm)</option> |
711 <yield/> | 737 <yield/> |
712 </param> | 738 </param> |
713 </xml> | 739 </xml> |
728 label="Use a copy of data for precomputing binarization" help=" "/> | 754 label="Use a copy of data for precomputing binarization" help=" "/> |
729 <param argument="threshold" type="float" optional="true" value="0.0" | 755 <param argument="threshold" type="float" optional="true" value="0.0" |
730 label="Threshold" | 756 label="Threshold" |
731 help="Feature values below or equal to this are replaced by 0, above it by 1. Threshold may not be less than 0 for operations on sparse matrices. "/> | 757 help="Feature values below or equal to this are replaced by 0, above it by 1. Threshold may not be less than 0 for operations on sparse matrices. "/> |
732 </section> | 758 </section> |
733 </when> | |
734 <when value="Imputer"> | |
735 <section name="options" title="Advanced Options" expanded="False"> | |
736 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" | |
737 label="Use a copy of data for precomputing imputation" help=" "/> | |
738 <param argument="strategy" type="select" optional="true" label="Imputation strategy" help=" "> | |
739 <option value="mean" selected="true">Replace missing values using the mean along the axis</option> | |
740 <option value="median">Replace missing values using the median along the axis</option> | |
741 <option value="most_frequent">Replace missing using the most frequent value along the axis</option> | |
742 </param> | |
743 <param argument="missing_values" type="text" optional="true" value="NaN" | |
744 label="Placeholder for missing values" help="For missing values encoded as numpy.nan, use the string value “NaN”"/> | |
745 <!--param argument="axis" type="boolean" optional="true" truevalue="1" falsevalue="0" | |
746 label="Impute along axis = 1" help="If fasle, axis = 0 is selected for imputation. "/> --> | |
747 <!--param argument="axis" type="select" optional="true" label="The axis along which to impute" help=" "> | |
748 <option value="0" selected="true">Impute along columns</option> | |
749 <option value="1">Impute along rows</option> | |
750 </param--> | |
751 </section> | |
752 </when> | 759 </when> |
753 <when value="StandardScaler"> | 760 <when value="StandardScaler"> |
754 <section name="options" title="Advanced Options" expanded="False"> | 761 <section name="options" title="Advanced Options" expanded="False"> |
755 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" | 762 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
756 label="Use a copy of data for performing inplace scaling" help=" "/> | 763 label="Use a copy of data for performing inplace scaling" help=" "/> |
786 <section name="options" title="Advanced Options" expanded="False"> | 793 <section name="options" title="Advanced Options" expanded="False"> |
787 </section> | 794 </section> |
788 </when> | 795 </when> |
789 <when value="MinMaxScaler"> | 796 <when value="MinMaxScaler"> |
790 <section name="options" title="Advanced Options" expanded="False"> | 797 <section name="options" title="Advanced Options" expanded="False"> |
791 <!--feature_range--> | 798 <param argument="feature_range" type="text" value="(0, 1)" optional="true" help="Desired range of transformed data. None or tuple (min, max). None equals to (0, 1)"/> |
792 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true" | 799 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true" |
793 label="Use a copy of data for precomputing normalization" help=" "/> | 800 label="Use a copy of data for precomputing normalization" help=" "/> |
794 </section> | 801 </section> |
795 </when> | 802 </when> |
796 <when value="PolynomialFeatures"> | 803 <when value="PolynomialFeatures"> |
920 </when> | 927 </when> |
921 </expand> | 928 </expand> |
922 </conditional> | 929 </conditional> |
923 </xml> | 930 </xml> |
924 | 931 |
925 <xml name="cv_reduced"> | 932 <xml name="cv_reduced" token_label="Select the cv splitter"> |
926 <conditional name="cv_selector"> | 933 <conditional name="cv_selector"> |
927 <param name="selected_cv" type="select" label="Select the cv splitter:"> | 934 <param name="selected_cv" type="select" label="@LABEL@"> |
928 <expand macro="cv_splitter"/> | 935 <expand macro="cv_splitter"/> |
929 </param> | 936 </param> |
930 <expand macro="cv_splitter_options"/> | 937 <expand macro="cv_splitter_options"/> |
931 </conditional> | 938 </conditional> |
932 </xml> | 939 </xml> |
933 | 940 |
934 <xml name="cv_n_splits" token_value="3" token_help="Number of folds. Must be at least 2."> | 941 <xml name="cv_n_splits" token_value="3" token_help="Number of folds. Must be at least 2."> |
935 <param argument="n_splits" type="integer" value="@VALUE@" min="2" label="n_splits" help="@HELP@"/> | 942 <param argument="n_splits" type="integer" value="@VALUE@" min="1" label="n_splits" help="@HELP@"/> |
936 </xml> | 943 </xml> |
937 | 944 |
938 <xml name="cv_shuffle"> | 945 <xml name="cv_shuffle"> |
939 <param argument="shuffle" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="false" label="Whether to shuffle data before splitting" /> | 946 <param argument="shuffle" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="false" label="Whether to shuffle data before splitting" /> |
940 </xml> | 947 </xml> |
949 <param name="header_g" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" /> | 956 <param name="header_g" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" /> |
950 <conditional name="column_selector_options_g"> | 957 <conditional name="column_selector_options_g"> |
951 <expand macro="samples_column_selector_options" column_option="selected_column_selector_option_g" col_name="col_g" multiple="False" infile="infile_g"/> | 958 <expand macro="samples_column_selector_options" column_option="selected_column_selector_option_g" col_name="col_g" multiple="False" infile="infile_g"/> |
952 </conditional> | 959 </conditional> |
953 </section> | 960 </section> |
961 </xml> | |
962 | |
963 <xml name="train_test_split_params"> | |
964 <conditional name="split_algos"> | |
965 <param name="shuffle" type="select" label="Select the splitting method"> | |
966 <option value="None">No shuffle</option> | |
967 <option value="simple" selected="true">ShuffleSplit</option> | |
968 <option value="stratified">StratifiedShuffleSplit -- target values serve as class labels</option> | |
969 <option value="group">GroupShuffleSplit or split by group names</option> | |
970 </param> | |
971 <when value="None"> | |
972 <expand macro="train_test_split_test_size"/> | |
973 </when> | |
974 <when value="simple"> | |
975 <expand macro="train_test_split_test_size"/> | |
976 <expand macro="random_state"/> | |
977 </when> | |
978 <when value="stratified"> | |
979 <expand macro="train_test_split_test_size"/> | |
980 <expand macro="random_state"/> | |
981 </when> | |
982 <when value="group"> | |
983 <expand macro="train_test_split_test_size" optional="true"/> | |
984 <expand macro="random_state"/> | |
985 <param argument="group_names" type="text" value="" optional="true" label="Type in group names instead" | |
986 help="For example: chr6, chr7. This parameter is optional. If used, it will override the holdout size and random seed."/> | |
987 <yield/> | |
988 </when> | |
989 </conditional> | |
990 <!--param argument="train_size" type="float" optional="True" value="" label="Train size:"/>--> | |
991 </xml> | |
992 | |
993 <xml name="train_test_split_test_size" token_optional="false"> | |
994 <param name="test_size" type="float" value="0.2" optional="@OPTIONAL@" label="Holdout size" help="Leass than 1, for preportion; greater than 1 (integer), for number of samples."/> | |
954 </xml> | 995 </xml> |
955 | 996 |
956 <xml name="feature_selection_algorithms"> | 997 <xml name="feature_selection_algorithms"> |
957 <option value="SelectKBest" selected="true">SelectKBest - Select features according to the k highest scores</option> | 998 <option value="SelectKBest" selected="true">SelectKBest - Select features according to the k highest scores</option> |
958 <option value="GenericUnivariateSelect">GenericUnivariateSelect - Univariate feature selector with configurable strategy</option> | 999 <option value="GenericUnivariateSelect">GenericUnivariateSelect - Univariate feature selector with configurable strategy</option> |
1165 </param> | 1206 </param> |
1166 </xml> | 1207 </xml> |
1167 | 1208 |
1168 <xml name="model_validation_common_options"> | 1209 <xml name="model_validation_common_options"> |
1169 <expand macro="cv"/> | 1210 <expand macro="cv"/> |
1170 <!-- expand macro="verbose"/> --> | 1211 <expand macro="verbose"/> |
1171 <yield/> | 1212 <yield/> |
1172 </xml> | 1213 </xml> |
1173 | 1214 |
1174 <xml name="scoring_selection"> | 1215 <xml name="scoring_selection"> |
1175 <conditional name="scoring"> | 1216 <conditional name="scoring"> |
1284 </xml> | 1325 </xml> |
1285 | 1326 |
1286 <xml name="search_cv_estimator"> | 1327 <xml name="search_cv_estimator"> |
1287 <param name="infile_estimator" type="data" format="zip" label="Choose the dataset containing pipeline/estimator object"/> | 1328 <param name="infile_estimator" type="data" format="zip" label="Choose the dataset containing pipeline/estimator object"/> |
1288 <section name="search_params_builder" title="Search parameters Builder" expanded="true"> | 1329 <section name="search_params_builder" title="Search parameters Builder" expanded="true"> |
1289 <param name="infile_params" type="data" format="tabular" label="Choose the dataset containing parameter names"/> | 1330 <param name="infile_params" type="data" format="tabular" optional="true" label="Choose the dataset containing parameter names" help="This dataset could be the output of `get_params` in the `Estimator Attributes` tool."/> |
1290 <repeat name="param_set" min="1" max="30" title="Parameter settings for search:"> | 1331 <repeat name="param_set" min="1" max="30" title="Parameter settings for search:"> |
1291 <param name="sp_name" type="select" label="Choose a parameter name (with current value)"> | 1332 <param name="sp_name" type="select" optional="true" label="Choose a parameter name (with current value)"> |
1292 <options from_dataset="infile_params" startswith="@"> | 1333 <options from_dataset="infile_params" startswith="@"> |
1293 <column name="name" index="2"/> | 1334 <column name="name" index="2"/> |
1294 <column name="value" index="1"/> | 1335 <column name="value" index="1"/> |
1295 <filter type="unique_value" name="unique_param" column="1"/> | 1336 <filter type="unique_value" name="unique_param" column="1"/> |
1296 <filter type="sort_by" name="sorted_param" column="2"/> | |
1297 </options> | 1337 </options> |
1298 </param> | 1338 </param> |
1299 <param name="sp_list" type="text" value="" optional="true" label="Search list" help="list or array-like, for example: [1, 10, 100, 1000], [True, False] and ['auto', 'sqrt', None]. See `help` section for more examples"> | 1339 <param name="sp_list" type="text" value="" optional="true" label="Search list" help="list or array-like, for example: [1, 10, 100, 1000], [True, False] and ['auto', 'sqrt', None]. See `help` section for more examples"> |
1300 <sanitizer> | 1340 <sanitizer> |
1301 <valid initial="default"> | 1341 <valid initial="default"> |
1302 <add value="'"/> | 1342 <add value="'"/> |
1303 <add value="""/> | 1343 <add value="""/> |
1304 <add value="["/> | 1344 <add value="["/> |
1305 <add value="]"/> | 1345 <add value="]"/> |
1346 </valid> | |
1347 </sanitizer> | |
1348 </param> | |
1349 </repeat> | |
1350 </section> | |
1351 </xml> | |
1352 | |
1353 <xml name="estimator_and_hyperparameter"> | |
1354 <param name="infile_estimator" type="data" format="zip" label="Choose the dataset containing pipeline/estimator object"/> | |
1355 <section name="hyperparams_swapping" title="Hyperparameter Swapping" expanded="false"> | |
1356 <param name="infile_params" type="data" format="tabular" optional="true" label="Choose the dataset containing hyperparameters for the pipeline/estimator above" help="This dataset could be the output of `get_params` in the `Estimator Attributes` tool."/> | |
1357 <repeat name="param_set" min="1" max="30" title="New hyperparameter setting"> | |
1358 <param name="sp_name" type="select" optional="true" label="Choose a parameter name (with current value)"> | |
1359 <options from_dataset="infile_params" startswith="@"> | |
1360 <column name="name" index="2"/> | |
1361 <column name="value" index="1"/> | |
1362 <filter type="unique_value" name="unique_param" column="1"/> | |
1363 </options> | |
1364 </param> | |
1365 <param name="sp_value" type="text" value="" optional="true" label="New value" help="Supports int, float, boolean, single quoted string, and selected object constructor. Similar to the `Parameter settings for search` section in `searchcv` tool except that only single value is expected here."> | |
1366 <sanitizer> | |
1367 <valid initial="default"> | |
1368 <add value="'"/> | |
1369 <add value="""/> | |
1306 </valid> | 1370 </valid> |
1307 </sanitizer> | 1371 </sanitizer> |
1308 </param> | 1372 </param> |
1309 </repeat> | 1373 </repeat> |
1310 </section> | 1374 </section> |
1748 </when> | 1812 </when> |
1749 </expand> | 1813 </expand> |
1750 </conditional> | 1814 </conditional> |
1751 </xml> | 1815 </xml> |
1752 | 1816 |
1817 <xml name="stacking_voting_weights"> | |
1818 <section name="options" title="Advanced Options" expanded="false"> | |
1819 <param argument="weights" type="text" value="[]" optional="true" help="Sequence of weights (float or int). Uses uniform weights if None (`[]`)."> | |
1820 <sanitizer> | |
1821 <valid initial="default"> | |
1822 <add value="["/> | |
1823 <add value="]"/> | |
1824 </valid> | |
1825 </sanitizer> | |
1826 </param> | |
1827 <yield/> | |
1828 </section> | |
1829 </xml> | |
1830 | |
1831 <xml name="preprocessors_sequence_encoders"> | |
1832 <conditional name="encoder_selection"> | |
1833 <param name="encoder_type" type="select" label="Choose the sequence encoder class"> | |
1834 <option value="GenomeOneHotEncoder">GenomeOneHotEncoder</option> | |
1835 <option value="ProteinOneHotEncoder">ProteinOneHotEncoder</option> | |
1836 </param> | |
1837 <when value="GenomeOneHotEncoder"> | |
1838 <expand macro="preprocessors_sequence_encoder_arguments"/> | |
1839 </when> | |
1840 <when value="ProteinOneHotEncoder"> | |
1841 <expand macro="preprocessors_sequence_encoder_arguments"/> | |
1842 </when> | |
1843 </conditional> | |
1844 </xml> | |
1845 | |
1846 <xml name="preprocessors_sequence_encoder_arguments"> | |
1847 <param argument="seq_length" type="integer" value="" min="0" optional="true" help="Integer. Sequence length"/> | |
1848 <param argument="padding" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="true" help="Whether to pad or truncate sequence to meet the sequence length."/> | |
1849 </xml> | |
1850 | |
1753 <!-- Outputs --> | 1851 <!-- Outputs --> |
1754 | 1852 |
1755 <xml name="output"> | 1853 <xml name="output"> |
1756 <outputs> | 1854 <outputs> |
1757 <data format="tabular" name="outfile_predict"> | 1855 <data format="tabular" name="outfile_predict"> |
1845 keywords = {large-scale machine learning}, | 1943 keywords = {large-scale machine learning}, |
1846 } | 1944 } |
1847 </citation> | 1945 </citation> |
1848 </xml> | 1946 </xml> |
1849 | 1947 |
1850 <xml name="imblearn_citation"> | 1948 <xml name="imblearn_citation"> |
1851 <citation type="bibtex"> | 1949 <citation type="bibtex"> |
1852 @article{JMLR:v18:16-365, | 1950 @article{JMLR:v18:16-365, |
1853 author = {Guillaume Lema{{\^i}}tre and Fernando Nogueira and Christos K. Aridas}, | 1951 author = {Guillaume Lema{{\^i}}tre and Fernando Nogueira and Christos K. Aridas}, |
1854 title = {Imbalanced-learn: A Python Toolbox to Tackle the Curse of Imbalanced Datasets in Machine Learning}, | 1952 title = {Imbalanced-learn: A Python Toolbox to Tackle the Curse of Imbalanced Datasets in Machine Learning}, |
1855 journal = {Journal of Machine Learning Research}, | 1953 journal = {Journal of Machine Learning Research}, |
1860 url = {http://jmlr.org/papers/v18/16-365.html} | 1958 url = {http://jmlr.org/papers/v18/16-365.html} |
1861 } | 1959 } |
1862 </citation> | 1960 </citation> |
1863 </xml> | 1961 </xml> |
1864 | 1962 |
1963 <xml name="selene_citation"> | |
1964 <citation type="bibtex"> | |
1965 @article{chen2019selene, | |
1966 title={Selene: a PyTorch-based deep learning library for sequence data}, | |
1967 author={Chen, Kathleen M and Cofer, Evan M and Zhou, Jian and Troyanskaya, Olga G}, | |
1968 journal={Nature methods}, | |
1969 volume={16}, | |
1970 number={4}, | |
1971 pages={315}, | |
1972 year={2019}, | |
1973 publisher={Nature Publishing Group} | |
1974 } | |
1975 </citation> | |
1976 </xml> | |
1977 | |
1865 </macros> | 1978 </macros> |