Mercurial > repos > bgruening > sklearn_clf_metrics

comparison clf_metrics.xml @ 2:504ea7ea42b1 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 641ac64ded23fbb6fe85d5f13926da12dcce4e76
author bgruening
date Tue, 13 Mar 2018 04:57:23 -0400
parents 0f5111e694db
children 82f51b60c4ee
comparison
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1:813b38053344 2:504ea7ea42b1
25 25
26 input_json_path = sys.argv[1] 26 input_json_path = sys.argv[1]
27 params = json.load(open(input_json_path, "r")) 27 params = json.load(open(input_json_path, "r"))
28 28
29 29
30 y_t = columns("$clf_metrics.infile1","$clf_metrics.col1") 30 y_t = read_columns(
31 y_p = columns("$clf_metrics.infile2","$clf_metrics.col2") 31 "$clf_metrics.infile1",
32 "$clf_metrics.col1",
33 sep='\t',
34 header=None,
35 parse_dates=True
36 )
37 y_p = read_columns(
38 "$clf_metrics.infile2",
39 "$clf_metrics.col2",
40 sep='\t',
41 header=None,
42 parse_dates=True
43 )
32 44
33 options = params["clf_metrics"].get("options", {}) 45 options = params["clf_metrics"].get("options", {})
34 print(options) 46 print(options)
35 if options and options.get('average', '') == 'None': 47 if options and options.get('average', '') == 'None':
36 options['average'] = None 48 options['average'] = None