Mercurial > repos > bgruening > sklearn_clf_metrics

comparison clf_metrics.xml @ 10:d147f912b882 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
author bgruening
date Tue, 05 Jun 2018 06:47:08 -0400
parents 82f51b60c4ee
children 5621f2be9fbc
comparison
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9:5fc54e80a39f 10:d147f912b882
25 25
26 input_json_path = sys.argv[1] 26 input_json_path = sys.argv[1]
27 params = json.load(open(input_json_path, "r")) 27 params = json.load(open(input_json_path, "r"))
28 28
29 header='infer' if params["clf_metrics"].get("header1", None) else None 29 header='infer' if params["clf_metrics"].get("header1", None) else None
30 column_option = params["clf_metrics"]["column_selector_options_1"]["selected_column_selector_option"]
31 if column_option == "by_index_number":
32 c = params["clf_metrics"]["column_selector_options_1"]["col1"]
33 else:
34 c = None
30 y_t = read_columns( 35 y_t = read_columns(
31 "$clf_metrics.infile1", 36 "$clf_metrics.infile1",
32 "$clf_metrics.col1", 37 c = c,
38 c_option = column_option,
33 sep='\t', 39 sep='\t',
34 header=header, 40 header=header,
35 parse_dates=True 41 parse_dates=True
36 ) 42 )
37 43
38 header='infer' if params["clf_metrics"].get("header2", None) else None 44 header='infer' if params["clf_metrics"].get("header2", None) else None
45 column_option = params["clf_metrics"]["column_selector_options_2"]["selected_column_selector_option2"]
46 if column_option == "by_index_number":
47 c = params["clf_metrics"]["column_selector_options_2"]["col2"]
48 else:
49 c = None
39 y_p = read_columns( 50 y_p = read_columns(
40 "$clf_metrics.infile2", 51 "$clf_metrics.infile2",
41 "$clf_metrics.col2", 52 c = c,
53 c_option = column_option,
42 sep='\t', 54 sep='\t',
43 header=header, 55 header=header,
44 parse_dates=True 56 parse_dates=True
45 ) 57 )
46 58