diff clf_metrics.xml @ 41:e3c787437a6d draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb

--- a/clf_metrics.xml	Thu Aug 11 09:27:14 2022 +0000
+++ b/clf_metrics.xml	Wed Aug 09 13:46:39 2023 +0000
@@ -77,7 +77,7 @@
                 <option value="f1_score">F1 score (aka balanced F-score or F-measure)</option>
                 <option value="fbeta_score">F-beta score</option>
                 <option value="hamming_loss">Average Hamming loss</option>
-                <option value="jaccard_similarity_score">Jaccard similarity coefficient score</option>
+                <option value="jaccard_score">Jaccard similarity coefficient score</option>
                 <option value="precision_recall_fscore_support">Compute precision, recall, F-measure and support for each class</option>
                 <option value="precision_score">Precision</option>
                 <option value="recall_score">Recall</option>
@@ -138,10 +138,11 @@
                     <!- -classes- ->
                 </section-->
             </when>
-            <when value="jaccard_similarity_score">
+            <when value="jaccard_score">
                 <expand macro="clf_inputs" />
                 <section name="options" title="Advanced Options" expanded="False">
-                    <param argument="normalize" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true" label="Normalize" help="If false, returns the sum of the Jaccard similarity coefficient over the sample set. Otherwise, returns the average of Jaccard similarity coefficient. " />
+                    <expand macro="average">
+                    </expand>
                 </section>
             </when>
             <when value="precision_recall_fscore_support">
@@ -188,9 +189,6 @@
             </when>
             <when value="auc">
                 <expand macro="clf_inputs" />
-                <section name="options" title="Advanced Options" expanded="False">
-                    <param argument="reorder" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="false" label="Assume an ascending curve in the case of ties" help="If the curve is non-ascending, the result will be wrong. " />
-                </section>
             </when>
             <when value="brier_score_loss">
                 <expand macro="clf_inputs" />
@@ -302,11 +300,12 @@
             <output name="outfile" file="hamming_loss.txt" />
         </test>
         <test>
-            <param name="selected_metric" value="jaccard_similarity_score" />
+            <param name="selected_metric" value="jaccard_score" />
             <param name="infile1" value="y.tabular" ftype="tabular" />
             <param name="col1" value="1" />
             <param name="infile2" value="y.tabular" ftype="tabular" />
             <param name="col2" value="2" />
+            <param name="average" value="weighted" />
             <output name="outfile" file="jaccard_similarity_score.txt" />
         </test>
         <test>
@@ -346,11 +345,10 @@
         </test>
         <test>
             <param name="selected_metric" value="auc" />
-            <param name="infile1" value="y.tabular" ftype="tabular" />
+            <param name="infile1" value="y_sorted.tabular" ftype="tabular" />
             <param name="col1" value="1" />
-            <param name="infile2" value="y.tabular" ftype="tabular" />
+            <param name="infile2" value="y_sorted.tabular" ftype="tabular" />
             <param name="col2" value="2" />
-            <param name="reorder" value="true" />
             <output name="outfile" file="auc.txt" />
         </test>
         <test>