Mercurial > repos > bgruening > sklearn_clf_metrics
changeset 2:504ea7ea42b1 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 641ac64ded23fbb6fe85d5f13926da12dcce4e76
| author | bgruening |
|---|---|
| date | Tue, 13 Mar 2018 04:57:23 -0400 |
| parents | 813b38053344 |
| children | 35b7a9c1c557 |
| files | clf_metrics.xml main_macros.xml |
| diffstat | 2 files changed, 16 insertions(+), 4 deletions(-) [+] |
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--- a/clf_metrics.xml Fri Feb 16 14:56:35 2018 -0500 +++ b/clf_metrics.xml Tue Mar 13 04:57:23 2018 -0400 @@ -27,8 +27,20 @@ params = json.load(open(input_json_path, "r")) -y_t = columns("$clf_metrics.infile1","$clf_metrics.col1") -y_p = columns("$clf_metrics.infile2","$clf_metrics.col2") +y_t = read_columns( + "$clf_metrics.infile1", + "$clf_metrics.col1", + sep='\t', + header=None, + parse_dates=True +) +y_p = read_columns( + "$clf_metrics.infile2", + "$clf_metrics.col2", + sep='\t', + header=None, + parse_dates=True +) options = params["clf_metrics"].get("options", {}) print(options)
--- a/main_macros.xml Fri Feb 16 14:56:35 2018 -0500 +++ b/main_macros.xml Tue Mar 13 04:57:23 2018 -0400 @@ -2,8 +2,8 @@ <token name="@VERSION@">0.9</token> <token name="@COLUMNS_FUNCTION@"> -def columns(f,c): - data = pandas.read_csv(f, sep='\t', header=None, index_col=None, parse_dates=True, encoding=None, tupleize_cols=False) +def read_columns(f, c, **args): + data = pandas.read_csv(f, **args) cols = c.split (',') cols = map(int, cols) cols = list(map(lambda x: x - 1, cols))