comparison main_macros.xml @ 11:1d2bcebc8678 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 64158f357e708f0b60d2669d92d614f7aee34c0e

10:93d391c5ba50

def read_columns(f, c=None, c_option='by_index_number', return_df=False, **args):
  data = pandas.read_csv(f, **args)
  if c_option == 'by_index_number':
    cols = list(map(lambda x: x - 1, c))
    data = data.iloc[:,cols]
  y = data.values
  if return_df:
    return y, data
  else:
    return y

  </xml>

  <xml name="samples_column_selector_options" token_column_option="selected_column_selector_option" token_col_name="col1" token_multiple="False" token_infile="infile1">
    <param name="@COLUMN_OPTION@" type="select" label="Choose how to select data by column:">
      <option value="by_index_number" selected="true">Select columns by column index number(s)</option>
      <!--
      <option value="by_header_name">Select columns by column header name(s)</option>
      <option value="all_but_by_index_number">All columns but by column index number(s)</option>
      <option value="all_but_by_header_name">All columns but by column header name(s)</option> 
      -->
      <option value="all_columns">All columns</option>
    </param>
    <when value="by_index_number">
      <param name="@COL_NAME@" multiple="@MULTIPLE@" type="data_column" data_ref="@INFILE@" label="Select target column(s):"/>
    </when>
    <when value="all_columns">
    </when>
  </xml>

11:1d2bcebc8678

def read_columns(f, c=None, c_option='by_index_number', return_df=False, **args):
  data = pandas.read_csv(f, **args)
  if c_option == 'by_index_number':
    cols = list(map(lambda x: x - 1, c))
    data = data.iloc[:,cols]
  if c_option == 'all_but_by_index_number':
    cols = list(map(lambda x: x - 1, c))
    data.drop(data.columns[cols], axis=1, inplace=True)
  y = data.values
  if return_df:
    return y, data
  else:
    return y

  </xml>

  <xml name="samples_column_selector_options" token_column_option="selected_column_selector_option" token_col_name="col1" token_multiple="False" token_infile="infile1">
    <param name="@COLUMN_OPTION@" type="select" label="Choose how to select data by column:">
      <option value="by_index_number" selected="true">Select columns by column index number(s)</option>
      <!--<option value="by_header_name">Select columns by column header name(s)</option>-->
      <option value="all_but_by_index_number">All columns but by column index number(s)</option>
      <!--<option value="all_but_by_header_name">All columns but by column header name(s)</option> -->
      <option value="all_columns">All columns</option>
    </param>
    <when value="by_index_number">
      <param name="@COL_NAME@" multiple="@MULTIPLE@" type="data_column" data_ref="@INFILE@" label="Select target column(s):"/>
    </when>
    <when value="all_but_by_index_number">
      <param name="@COL_NAME@" multiple="@MULTIPLE@" type="data_column" data_ref="@INFILE@" label="Select target column(s):"/>
    </when>
    <when value="all_columns">
    </when>
  </xml>